miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10803 3' -58.8 NC_002794.1 + 194141 0.67 0.827577
Target:  5'- -aGCGGCCGcagcAGCGCC-CG-CGAGCc- -3'
miRNA:   3'- ugUGCUGGC----UCGCGGaGCuGCUCGag -5'
10803 3' -58.8 NC_002794.1 + 190946 0.68 0.73934
Target:  5'- aGCACGGCCccagcagcaccAGCGCCUCGGgGcAGCa- -3'
miRNA:   3'- -UGUGCUGGc----------UCGCGGAGCUgC-UCGag -5'
10803 3' -58.8 NC_002794.1 + 186302 0.72 0.50672
Target:  5'- -gGCGGCCGGuCGCCgCGGCGcGCUCg -3'
miRNA:   3'- ugUGCUGGCUcGCGGaGCUGCuCGAG- -5'
10803 3' -58.8 NC_002794.1 + 186139 0.66 0.835616
Target:  5'- aGCACGGCCGucacgccuucCGCCUCGcCGGcCUCu -3'
miRNA:   3'- -UGUGCUGGCuc--------GCGGAGCuGCUcGAG- -5'
10803 3' -58.8 NC_002794.1 + 185125 0.69 0.720392
Target:  5'- uGCACGACCaggcGGCGCCgCGuCGAGaagaUCg -3'
miRNA:   3'- -UGUGCUGGc---UCGCGGaGCuGCUCg---AG- -5'
10803 3' -58.8 NC_002794.1 + 183615 0.69 0.709846
Target:  5'- cGCGCGGCCGGcgcccccGCGCCccCGAcuCGAGCa- -3'
miRNA:   3'- -UGUGCUGGCU-------CGCGGa-GCU--GCUCGag -5'
10803 3' -58.8 NC_002794.1 + 183158 0.66 0.843484
Target:  5'- cACGCGGCCGGGCuGCC-CGAgccgguCGGGgaCc -3'
miRNA:   3'- -UGUGCUGGCUCG-CGGaGCU------GCUCgaG- -5'
10803 3' -58.8 NC_002794.1 + 182990 0.72 0.525547
Target:  5'- -gACGGCCG-GCGCUUCGccGCGGGCg- -3'
miRNA:   3'- ugUGCUGGCuCGCGGAGC--UGCUCGag -5'
10803 3' -58.8 NC_002794.1 + 181832 0.67 0.802497
Target:  5'- uCGCGGCCaGGUcCCg-GGCGAGCUCg -3'
miRNA:   3'- uGUGCUGGcUCGcGGagCUGCUCGAG- -5'
10803 3' -58.8 NC_002794.1 + 181684 0.72 0.50672
Target:  5'- uGCGCgGACCGccGCGCCUCGGCccacacGCUCg -3'
miRNA:   3'- -UGUG-CUGGCu-CGCGGAGCUGcu----CGAG- -5'
10803 3' -58.8 NC_002794.1 + 181472 0.67 0.81101
Target:  5'- cCGCG-CCGAGuCGCCaggcaGACGAGCc- -3'
miRNA:   3'- uGUGCuGGCUC-GCGGag---CUGCUCGag -5'
10803 3' -58.8 NC_002794.1 + 181069 0.68 0.748688
Target:  5'- aACGCGGguCCGGGCaggggcacGCuCUCGAUGAcGCUCu -3'
miRNA:   3'- -UGUGCU--GGCUCG--------CG-GAGCUGCU-CGAG- -5'
10803 3' -58.8 NC_002794.1 + 180682 0.71 0.563936
Target:  5'- cGC-CGGCCGcucccGGCGCC-CGGCGGGCg- -3'
miRNA:   3'- -UGuGCUGGC-----UCGCGGaGCUGCUCGag -5'
10803 3' -58.8 NC_002794.1 + 179616 0.69 0.723254
Target:  5'- gGCGCGagcgacuGCCGGGCGCUgcgaCGgaaaggagaagucagGCGGGCUCg -3'
miRNA:   3'- -UGUGC-------UGGCUCGCGGa---GC---------------UGCUCGAG- -5'
10803 3' -58.8 NC_002794.1 + 178906 0.68 0.729905
Target:  5'- cCGCaGugCGGGUucGCCUCGGCGuGUUCc -3'
miRNA:   3'- uGUG-CugGCUCG--CGGAGCUGCuCGAG- -5'
10803 3' -58.8 NC_002794.1 + 176869 0.74 0.400899
Target:  5'- uACGgaGugCGAGCGUCUCGAUcauGGGCUCg -3'
miRNA:   3'- -UGUg-CugGCUCGCGGAGCUG---CUCGAG- -5'
10803 3' -58.8 NC_002794.1 + 156110 0.68 0.748688
Target:  5'- uCGCGucGCCGAGUGUCgUCGACGAagGCaUCg -3'
miRNA:   3'- uGUGC--UGGCUCGCGG-AGCUGCU--CG-AG- -5'
10803 3' -58.8 NC_002794.1 + 154348 0.71 0.587329
Target:  5'- cCGCGGCCGAGCucccgcgcgguccagGCCgcggcggCGGCGGGCa- -3'
miRNA:   3'- uGUGCUGGCUCG---------------CGGa------GCUGCUCGag -5'
10803 3' -58.8 NC_002794.1 + 151736 0.66 0.858679
Target:  5'- uCGuCGGCCGccGGuCGCCUCG-CGcGCUCg -3'
miRNA:   3'- uGU-GCUGGC--UC-GCGGAGCuGCuCGAG- -5'
10803 3' -58.8 NC_002794.1 + 150967 0.66 0.83482
Target:  5'- cUACGACCu-GC-CCUCGgccggucuggacgACGAGCUCg -3'
miRNA:   3'- uGUGCUGGcuCGcGGAGC-------------UGCUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.