miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10803 5' -58.5 NC_002794.1 + 193745 0.66 0.864181
Target:  5'- cGCGGCUUCGGc-GAGCg--ACCGCCGg -3'
miRNA:   3'- -UGCUGGAGCCcaUUCGacgUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 131549 0.66 0.864181
Target:  5'- cACGGCCUCGcccguGGUcGGCgcgGCGCCcGUCu -3'
miRNA:   3'- -UGCUGGAGC-----CCAuUCGa--CGUGG-CGGu -5'
10803 5' -58.5 NC_002794.1 + 91239 0.66 0.864181
Target:  5'- gGCGGCCgUCGGGcUGcGCUcGCGgaCGCCGu -3'
miRNA:   3'- -UGCUGG-AGCCC-AUuCGA-CGUg-GCGGU- -5'
10803 5' -58.5 NC_002794.1 + 77661 0.66 0.864181
Target:  5'- uGCGGCCcgCGGGUcuGCgggGuCAUCGUCGg -3'
miRNA:   3'- -UGCUGGa-GCCCAuuCGa--C-GUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 18822 0.66 0.864181
Target:  5'- gGCGACCUCGGccggcgcggaGgagaccucGAGC-GCGCCGUCGc -3'
miRNA:   3'- -UGCUGGAGCC----------Ca-------UUCGaCGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 48206 0.66 0.863446
Target:  5'- cCGGCCuUCGaGGUagaggcaGAGCagGCGgCCGCCAu -3'
miRNA:   3'- uGCUGG-AGC-CCA-------UUCGa-CGU-GGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 88739 0.66 0.854482
Target:  5'- gAUGACCUCGGGgucgccgaggaauguGGUgccugGCGUCGCCGg -3'
miRNA:   3'- -UGCUGGAGCCCau-------------UCGa----CGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 190966 0.66 0.849126
Target:  5'- aGCG-CCUCGGGgcAGCagagcagGCAgCGCg- -3'
miRNA:   3'- -UGCuGGAGCCCauUCGa------CGUgGCGgu -5'
10803 5' -58.5 NC_002794.1 + 152103 0.66 0.849126
Target:  5'- uACcGCCgucUGGGgcuuGCUGCGCCGCUc -3'
miRNA:   3'- -UGcUGGa--GCCCauu-CGACGUGGCGGu -5'
10803 5' -58.5 NC_002794.1 + 108191 0.66 0.849126
Target:  5'- -gGACUgcgagCGGc---GCUGCGCCGCCGc -3'
miRNA:   3'- ugCUGGa----GCCcauuCGACGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 176739 0.66 0.841316
Target:  5'- uGCGACCUgUGGGUcuGCgGCAUCcCCGa -3'
miRNA:   3'- -UGCUGGA-GCCCAuuCGaCGUGGcGGU- -5'
10803 5' -58.5 NC_002794.1 + 37202 0.66 0.841316
Target:  5'- cACGACgUCGGGc-AGCccGCACUGCg- -3'
miRNA:   3'- -UGCUGgAGCCCauUCGa-CGUGGCGgu -5'
10803 5' -58.5 NC_002794.1 + 134593 0.66 0.836544
Target:  5'- -gGACCUCGGGccgAcuccggaucccgccgAGUUG-ACCGCCAu -3'
miRNA:   3'- ugCUGGAGCCCa--U---------------UCGACgUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 117355 0.66 0.833327
Target:  5'- cACGAUCUCGuugGAGCgGCggGCCGCCu -3'
miRNA:   3'- -UGCUGGAGCccaUUCGaCG--UGGCGGu -5'
10803 5' -58.5 NC_002794.1 + 107043 0.66 0.833327
Target:  5'- -gGACCcccgcgUCGGaGgcGGCgggcgcgGCGCCGCCGg -3'
miRNA:   3'- ugCUGG------AGCC-CauUCGa------CGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 194837 0.66 0.833327
Target:  5'- cGCGGCC-CGGcGUcuccAGCcGCACCGUCu -3'
miRNA:   3'- -UGCUGGaGCC-CAu---UCGaCGUGGCGGu -5'
10803 5' -58.5 NC_002794.1 + 122783 0.67 0.825165
Target:  5'- aGCGGCCUCGacGGcgugGAGUU-CGCCGUCAa -3'
miRNA:   3'- -UGCUGGAGC--CCa---UUCGAcGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 108443 0.67 0.825165
Target:  5'- gGCGGCaCUCGcGgcGGCgGC-CCGCCGg -3'
miRNA:   3'- -UGCUG-GAGCcCauUCGaCGuGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 118619 0.67 0.825165
Target:  5'- -aGAUgaUGaGGaUGAGCUGCugCGCCAg -3'
miRNA:   3'- ugCUGgaGC-CC-AUUCGACGugGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 26265 0.67 0.816837
Target:  5'- -aGACCUUGGGggcGGCUcgAUCGCCGg -3'
miRNA:   3'- ugCUGGAGCCCau-UCGAcgUGGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.