Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10803 | 5' | -58.5 | NC_002794.1 | + | 193745 | 0.66 | 0.864181 |
Target: 5'- cGCGGCUUCGGc-GAGCg--ACCGCCGg -3' miRNA: 3'- -UGCUGGAGCCcaUUCGacgUGGCGGU- -5' |
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10803 | 5' | -58.5 | NC_002794.1 | + | 117355 | 0.66 | 0.833327 |
Target: 5'- cACGAUCUCGuugGAGCgGCggGCCGCCu -3' miRNA: 3'- -UGCUGGAGCccaUUCGaCG--UGGCGGu -5' |
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10803 | 5' | -58.5 | NC_002794.1 | + | 107043 | 0.66 | 0.833327 |
Target: 5'- -gGACCcccgcgUCGGaGgcGGCgggcgcgGCGCCGCCGg -3' miRNA: 3'- ugCUGG------AGCC-CauUCGa------CGUGGCGGU- -5' |
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10803 | 5' | -58.5 | NC_002794.1 | + | 134593 | 0.66 | 0.836544 |
Target: 5'- -gGACCUCGGGccgAcuccggaucccgccgAGUUG-ACCGCCAu -3' miRNA: 3'- ugCUGGAGCCCa--U---------------UCGACgUGGCGGU- -5' |
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10803 | 5' | -58.5 | NC_002794.1 | + | 194837 | 0.66 | 0.833327 |
Target: 5'- cGCGGCC-CGGcGUcuccAGCcGCACCGUCu -3' miRNA: 3'- -UGCUGGaGCC-CAu---UCGaCGUGGCGGu -5' |
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10803 | 5' | -58.5 | NC_002794.1 | + | 108191 | 0.66 | 0.849126 |
Target: 5'- -gGACUgcgagCGGc---GCUGCGCCGCCGc -3' miRNA: 3'- ugCUGGa----GCCcauuCGACGUGGCGGU- -5' |
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10803 | 5' | -58.5 | NC_002794.1 | + | 176739 | 0.66 | 0.841316 |
Target: 5'- uGCGACCUgUGGGUcuGCgGCAUCcCCGa -3' miRNA: 3'- -UGCUGGA-GCCCAuuCGaCGUGGcGGU- -5' |
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10803 | 5' | -58.5 | NC_002794.1 | + | 37202 | 0.66 | 0.841316 |
Target: 5'- cACGACgUCGGGc-AGCccGCACUGCg- -3' miRNA: 3'- -UGCUGgAGCCCauUCGa-CGUGGCGgu -5' |
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10803 | 5' | -58.5 | NC_002794.1 | + | 152103 | 0.66 | 0.849126 |
Target: 5'- uACcGCCgucUGGGgcuuGCUGCGCCGCUc -3' miRNA: 3'- -UGcUGGa--GCCCauu-CGACGUGGCGGu -5' |
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10803 | 5' | -58.5 | NC_002794.1 | + | 88739 | 0.66 | 0.854482 |
Target: 5'- gAUGACCUCGGGgucgccgaggaauguGGUgccugGCGUCGCCGg -3' miRNA: 3'- -UGCUGGAGCCCau-------------UCGa----CGUGGCGGU- -5' |
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10803 | 5' | -58.5 | NC_002794.1 | + | 131549 | 0.66 | 0.864181 |
Target: 5'- cACGGCCUCGcccguGGUcGGCgcgGCGCCcGUCu -3' miRNA: 3'- -UGCUGGAGC-----CCAuUCGa--CGUGG-CGGu -5' |
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10803 | 5' | -58.5 | NC_002794.1 | + | 91239 | 0.66 | 0.864181 |
Target: 5'- gGCGGCCgUCGGGcUGcGCUcGCGgaCGCCGu -3' miRNA: 3'- -UGCUGG-AGCCC-AUuCGA-CGUg-GCGGU- -5' |
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10803 | 5' | -58.5 | NC_002794.1 | + | 77661 | 0.66 | 0.864181 |
Target: 5'- uGCGGCCcgCGGGUcuGCgggGuCAUCGUCGg -3' miRNA: 3'- -UGCUGGa-GCCCAuuCGa--C-GUGGCGGU- -5' |
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10803 | 5' | -58.5 | NC_002794.1 | + | 18822 | 0.66 | 0.864181 |
Target: 5'- gGCGACCUCGGccggcgcggaGgagaccucGAGC-GCGCCGUCGc -3' miRNA: 3'- -UGCUGGAGCC----------Ca-------UUCGaCGUGGCGGU- -5' |
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10803 | 5' | -58.5 | NC_002794.1 | + | 48206 | 0.66 | 0.863446 |
Target: 5'- cCGGCCuUCGaGGUagaggcaGAGCagGCGgCCGCCAu -3' miRNA: 3'- uGCUGG-AGC-CCA-------UUCGa-CGU-GGCGGU- -5' |
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10803 | 5' | -58.5 | NC_002794.1 | + | 190966 | 0.66 | 0.849126 |
Target: 5'- aGCG-CCUCGGGgcAGCagagcagGCAgCGCg- -3' miRNA: 3'- -UGCuGGAGCCCauUCGa------CGUgGCGgu -5' |
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10803 | 5' | -58.5 | NC_002794.1 | + | 108443 | 0.67 | 0.825165 |
Target: 5'- gGCGGCaCUCGcGgcGGCgGC-CCGCCGg -3' miRNA: 3'- -UGCUG-GAGCcCauUCGaCGuGGCGGU- -5' |
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10803 | 5' | -58.5 | NC_002794.1 | + | 118619 | 0.67 | 0.825165 |
Target: 5'- -aGAUgaUGaGGaUGAGCUGCugCGCCAg -3' miRNA: 3'- ugCUGgaGC-CC-AUUCGACGugGCGGU- -5' |
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10803 | 5' | -58.5 | NC_002794.1 | + | 122963 | 0.67 | 0.808351 |
Target: 5'- aGCGugaGCCUgGGGU-GGCUGUACgcgCGCCu -3' miRNA: 3'- -UGC---UGGAgCCCAuUCGACGUG---GCGGu -5' |
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10803 | 5' | -58.5 | NC_002794.1 | + | 26265 | 0.67 | 0.816837 |
Target: 5'- -aGACCUUGGGggcGGCUcgAUCGCCGg -3' miRNA: 3'- ugCUGGAGCCCau-UCGAcgUGGCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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