miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10803 5' -58.5 NC_002794.1 + 74434 1.08 0.002642
Target:  5'- gACGACCUCGGGUAAGCUGCACCGCCAc -3'
miRNA:   3'- -UGCUGGAGCCCAUUCGACGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 114728 0.75 0.363052
Target:  5'- gGCGGCUcCGGGUucgucGAGCcgGCGCCGCCc -3'
miRNA:   3'- -UGCUGGaGCCCA-----UUCGa-CGUGGCGGu -5'
10803 5' -58.5 NC_002794.1 + 86826 0.74 0.428805
Target:  5'- cGCGACCucgccgggaUCGGGUcGGCgGCcCCGCCGg -3'
miRNA:   3'- -UGCUGG---------AGCCCAuUCGaCGuGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 118130 0.74 0.437507
Target:  5'- -aGAUCUCGGGgAAGUcggggUGCACCGUCAu -3'
miRNA:   3'- ugCUGGAGCCCaUUCG-----ACGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 141418 0.73 0.464207
Target:  5'- gAUGACCUCGGGggcGGCggggGCGCCgggggcGCCGg -3'
miRNA:   3'- -UGCUGGAGCCCau-UCGa---CGUGG------CGGU- -5'
10803 5' -58.5 NC_002794.1 + 125825 0.72 0.491732
Target:  5'- uGCGuCCUCGGcGcccugcuGCUGCGCUGCCGg -3'
miRNA:   3'- -UGCuGGAGCC-Cauu----CGACGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 137875 0.72 0.510495
Target:  5'- uGCGGCgUCuGGUGGGCgaUGC-CCGCCAg -3'
miRNA:   3'- -UGCUGgAGcCCAUUCG--ACGuGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 121210 0.72 0.519988
Target:  5'- uCGACUUCGGG--GGCgGcCGCCGCCGc -3'
miRNA:   3'- uGCUGGAGCCCauUCGaC-GUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 62681 0.72 0.528591
Target:  5'- aACcGCCUgCGGGUGcAGCUGUgucggcgGCCGCCGa -3'
miRNA:   3'- -UGcUGGA-GCCCAU-UCGACG-------UGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 8126 0.72 0.52955
Target:  5'- gGCGGCCUCcucGGUGaccGGCgacgGCACCGCUu -3'
miRNA:   3'- -UGCUGGAGc--CCAU---UCGa---CGUGGCGGu -5'
10803 5' -58.5 NC_002794.1 + 44713 0.71 0.54886
Target:  5'- cGCGACCgCGGcgacGUcGGCcgGCGCCGCCGg -3'
miRNA:   3'- -UGCUGGaGCC----CAuUCGa-CGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 96514 0.71 0.568383
Target:  5'- -aGGCCuUUGGGaagGAGCUGCGCCucuGCCGc -3'
miRNA:   3'- ugCUGG-AGCCCa--UUCGACGUGG---CGGU- -5'
10803 5' -58.5 NC_002794.1 + 189756 0.71 0.578212
Target:  5'- uCGGCaCUCGGuUucGgUGCACCGCCAg -3'
miRNA:   3'- uGCUG-GAGCCcAuuCgACGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 115279 0.71 0.588076
Target:  5'- aACGGCgUggacacggggaaCGGGgaccGCUGCGCCGCCGu -3'
miRNA:   3'- -UGCUGgA------------GCCCauu-CGACGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 175200 0.71 0.588076
Target:  5'- uCGGCCUUGGcgucgauguGUAAGCUGUAUCGCg- -3'
miRNA:   3'- uGCUGGAGCC---------CAUUCGACGUGGCGgu -5'
10803 5' -58.5 NC_002794.1 + 34474 0.71 0.588076
Target:  5'- uGCGcACCUUc---AAGCUGCGCCGCCAg -3'
miRNA:   3'- -UGC-UGGAGcccaUUCGACGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 133534 0.71 0.597971
Target:  5'- uUGGCCgacCGGGUAcGCguugUGCACCGUCAc -3'
miRNA:   3'- uGCUGGa--GCCCAUuCG----ACGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 105729 0.71 0.597971
Target:  5'- gGCGGCCgUCGGGaAAGCgucGuCGCCGUCGu -3'
miRNA:   3'- -UGCUGG-AGCCCaUUCGa--C-GUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 114260 0.71 0.597971
Target:  5'- aGCGucuCCgggggCGGGUcguGCUGCACCaGCCGu -3'
miRNA:   3'- -UGCu--GGa----GCCCAuu-CGACGUGG-CGGU- -5'
10803 5' -58.5 NC_002794.1 + 115045 0.7 0.617826
Target:  5'- uGCGACCgggcggCGGGc-GGCaGCGCCGuCCAg -3'
miRNA:   3'- -UGCUGGa-----GCCCauUCGaCGUGGC-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.