miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10803 5' -58.5 NC_002794.1 + 183862 0.7 0.627772
Target:  5'- cGCGGCCgUCGGGgccaccGCcGaCACCGCCGc -3'
miRNA:   3'- -UGCUGG-AGCCCauu---CGaC-GUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 105418 0.7 0.634736
Target:  5'- uCGGCCUCcaGGGUGgccgccgccgcgccGGCgGCGCCGUCGu -3'
miRNA:   3'- uGCUGGAG--CCCAU--------------UCGaCGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 162022 0.7 0.651641
Target:  5'- cACGGCCauuuccgauuacccaUCGGGgcgUGAGCcGCACCGCg- -3'
miRNA:   3'- -UGCUGG---------------AGCCC---AUUCGaCGUGGCGgu -5'
10803 5' -58.5 NC_002794.1 + 116147 0.69 0.667513
Target:  5'- gGCGGCCa-GGGc---CUGCACCGCCu -3'
miRNA:   3'- -UGCUGGagCCCauucGACGUGGCGGu -5'
10803 5' -58.5 NC_002794.1 + 60933 0.69 0.667513
Target:  5'- cACGGCCaUCGGc----CUGCACCGCCu -3'
miRNA:   3'- -UGCUGG-AGCCcauucGACGUGGCGGu -5'
10803 5' -58.5 NC_002794.1 + 53907 0.69 0.697061
Target:  5'- gGCGuCCUCGucgccGUcGGCgGCGCCGCCGa -3'
miRNA:   3'- -UGCuGGAGCc----CAuUCGaCGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 48632 0.69 0.716516
Target:  5'- aGCGGCCgUCGGGgcccGCga-GCCGCCGc -3'
miRNA:   3'- -UGCUGG-AGCCCauu-CGacgUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 49821 0.68 0.726145
Target:  5'- cGCGGCCacgUCuGaUAGGCgagGCGCCGCCAu -3'
miRNA:   3'- -UGCUGG---AGcCcAUUCGa--CGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 37723 0.68 0.735698
Target:  5'- cGCGACC-CGc--GAGCggcgGCGCCGCCGg -3'
miRNA:   3'- -UGCUGGaGCccaUUCGa---CGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 104413 0.68 0.754541
Target:  5'- cGCGGCCUCGGccucGGCcGCcggcccggacGCCGCCGc -3'
miRNA:   3'- -UGCUGGAGCCcau-UCGaCG----------UGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 94819 0.68 0.754541
Target:  5'- uACuACCggCGGGUGcugcGGCUGgACCGCUg -3'
miRNA:   3'- -UGcUGGa-GCCCAU----UCGACgUGGCGGu -5'
10803 5' -58.5 NC_002794.1 + 35272 0.68 0.754541
Target:  5'- uGCGGCUgaaacacCGGGUGGGCgucgUGCgcccucggacggACCGCCAg -3'
miRNA:   3'- -UGCUGGa------GCCCAUUCG----ACG------------UGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 194514 0.68 0.754541
Target:  5'- cGCGGCC-CGcGUGccgccggcccAGCaGCGCCGCCAg -3'
miRNA:   3'- -UGCUGGaGCcCAU----------UCGaCGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 23465 0.68 0.772974
Target:  5'- uCGACgUCGGGgcggagGGGuCUGCcaugaucgcGCCGCCGu -3'
miRNA:   3'- uGCUGgAGCCCa-----UUC-GACG---------UGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 104750 0.68 0.772974
Target:  5'- uCGAUCUCGuGGU-AGCggucgGC-CCGCCGg -3'
miRNA:   3'- uGCUGGAGC-CCAuUCGa----CGuGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 113657 0.68 0.772974
Target:  5'- gGCGuCCUCGGcGUccagcgcggcGAGCagGC-CCGCCAc -3'
miRNA:   3'- -UGCuGGAGCC-CA----------UUCGa-CGuGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 119496 0.67 0.782017
Target:  5'- uGCGuCCUCGGGgucgucGGCgGCGCggaGCCGg -3'
miRNA:   3'- -UGCuGGAGCCCau----UCGaCGUGg--CGGU- -5'
10803 5' -58.5 NC_002794.1 + 149703 0.67 0.782017
Target:  5'- -gGGCCgccuggCGGGUGGGCcGC-CUGCCu -3'
miRNA:   3'- ugCUGGa-----GCCCAUUCGaCGuGGCGGu -5'
10803 5' -58.5 NC_002794.1 + 186947 0.67 0.782017
Target:  5'- cACGGCCccCGGGcc-GCUGgcCGCCGCCu -3'
miRNA:   3'- -UGCUGGa-GCCCauuCGAC--GUGGCGGu -5'
10803 5' -58.5 NC_002794.1 + 60860 0.67 0.790047
Target:  5'- gGCGACCUCGGcc-GGCUcucaaguacaucgGCGCCGUg- -3'
miRNA:   3'- -UGCUGGAGCCcauUCGA-------------CGUGGCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.