miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10803 5' -58.5 NC_002794.1 + 122963 0.67 0.808351
Target:  5'- aGCGugaGCCUgGGGU-GGCUGUACgcgCGCCu -3'
miRNA:   3'- -UGC---UGGAgCCCAuUCGACGUG---GCGGu -5'
10803 5' -58.5 NC_002794.1 + 108971 0.67 0.808351
Target:  5'- uACGGCagcugagCGuGGcgAAGCUGCugCGCCu -3'
miRNA:   3'- -UGCUGga-----GC-CCa-UUCGACGugGCGGu -5'
10803 5' -58.5 NC_002794.1 + 19953 0.67 0.808351
Target:  5'- -aGACgUgCGGGcuucGAGCUGCGgCCGCCc -3'
miRNA:   3'- ugCUGgA-GCCCa---UUCGACGU-GGCGGu -5'
10803 5' -58.5 NC_002794.1 + 74077 0.67 0.808351
Target:  5'- gGCGGCCcuccucgccgagUCGGGacAGCUGCgGCUGCUc -3'
miRNA:   3'- -UGCUGG------------AGCCCauUCGACG-UGGCGGu -5'
10803 5' -58.5 NC_002794.1 + 101589 0.67 0.808351
Target:  5'- cGCGGCCgggGGGgcGGgUGCcggcCCGCCGg -3'
miRNA:   3'- -UGCUGGag-CCCauUCgACGu---GGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 151677 0.67 0.808351
Target:  5'- gACGACCgaGGGUAcuugGGUcGCcCCGCCGg -3'
miRNA:   3'- -UGCUGGagCCCAU----UCGaCGuGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 141521 0.67 0.808351
Target:  5'- uACGACgCcUGGGcGGGCUGC-UCGCCGa -3'
miRNA:   3'- -UGCUG-GaGCCCaUUCGACGuGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 17418 0.67 0.808351
Target:  5'- cGCGGCCaUCGcGGUcu-CcGCGCCGCCGg -3'
miRNA:   3'- -UGCUGG-AGC-CCAuucGaCGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 48446 0.67 0.805776
Target:  5'- gGCGGCCaUCGGGacacAGCcGCcacgucagggcgaaGCCGCCGg -3'
miRNA:   3'- -UGCUGG-AGCCCau--UCGaCG--------------UGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 10765 0.67 0.799714
Target:  5'- gACGACggCGGcGUgGAGCUGCAgugCGCCAu -3'
miRNA:   3'- -UGCUGgaGCC-CA-UUCGACGUg--GCGGU- -5'
10803 5' -58.5 NC_002794.1 + 38098 0.67 0.797969
Target:  5'- cGCGACCggcgugaagacgCGGGaGAGCcGCGCCaGCUg -3'
miRNA:   3'- -UGCUGGa-----------GCCCaUUCGaCGUGG-CGGu -5'
10803 5' -58.5 NC_002794.1 + 98937 0.67 0.790933
Target:  5'- cGCGGCCgggaaGGGgcugGGGCUcgugcuggGCGCCGUCGg -3'
miRNA:   3'- -UGCUGGag---CCCa---UUCGA--------CGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 60860 0.67 0.790047
Target:  5'- gGCGACCUCGGcc-GGCUcucaaguacaucgGCGCCGUg- -3'
miRNA:   3'- -UGCUGGAGCCcauUCGA-------------CGUGGCGgu -5'
10803 5' -58.5 NC_002794.1 + 149703 0.67 0.782017
Target:  5'- -gGGCCgccuggCGGGUGGGCcGC-CUGCCu -3'
miRNA:   3'- ugCUGGa-----GCCCAUUCGaCGuGGCGGu -5'
10803 5' -58.5 NC_002794.1 + 119496 0.67 0.782017
Target:  5'- uGCGuCCUCGGGgucgucGGCgGCGCggaGCCGg -3'
miRNA:   3'- -UGCuGGAGCCCau----UCGaCGUGg--CGGU- -5'
10803 5' -58.5 NC_002794.1 + 186947 0.67 0.782017
Target:  5'- cACGGCCccCGGGcc-GCUGgcCGCCGCCu -3'
miRNA:   3'- -UGCUGGa-GCCCauuCGAC--GUGGCGGu -5'
10803 5' -58.5 NC_002794.1 + 23465 0.68 0.772974
Target:  5'- uCGACgUCGGGgcggagGGGuCUGCcaugaucgcGCCGCCGu -3'
miRNA:   3'- uGCUGgAGCCCa-----UUC-GACG---------UGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 104750 0.68 0.772974
Target:  5'- uCGAUCUCGuGGU-AGCggucgGC-CCGCCGg -3'
miRNA:   3'- uGCUGGAGC-CCAuUCGa----CGuGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 113657 0.68 0.772974
Target:  5'- gGCGuCCUCGGcGUccagcgcggcGAGCagGC-CCGCCAc -3'
miRNA:   3'- -UGCuGGAGCC-CA----------UUCGa-CGuGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 194514 0.68 0.754541
Target:  5'- cGCGGCC-CGcGUGccgccggcccAGCaGCGCCGCCAg -3'
miRNA:   3'- -UGCUGGaGCcCAU----------UCGaCGUGGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.