miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10803 5' -58.5 NC_002794.1 + 194514 0.68 0.754541
Target:  5'- cGCGGCC-CGcGUGccgccggcccAGCaGCGCCGCCAg -3'
miRNA:   3'- -UGCUGGaGCcCAU----------UCGaCGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 35272 0.68 0.754541
Target:  5'- uGCGGCUgaaacacCGGGUGGGCgucgUGCgcccucggacggACCGCCAg -3'
miRNA:   3'- -UGCUGGa------GCCCAUUCG----ACG------------UGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 94819 0.68 0.754541
Target:  5'- uACuACCggCGGGUGcugcGGCUGgACCGCUg -3'
miRNA:   3'- -UGcUGGa-GCCCAU----UCGACgUGGCGGu -5'
10803 5' -58.5 NC_002794.1 + 37723 0.68 0.735698
Target:  5'- cGCGACC-CGc--GAGCggcgGCGCCGCCGg -3'
miRNA:   3'- -UGCUGGaGCccaUUCGa---CGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 49821 0.68 0.726145
Target:  5'- cGCGGCCacgUCuGaUAGGCgagGCGCCGCCAu -3'
miRNA:   3'- -UGCUGG---AGcCcAUUCGa--CGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 48632 0.69 0.716516
Target:  5'- aGCGGCCgUCGGGgcccGCga-GCCGCCGc -3'
miRNA:   3'- -UGCUGG-AGCCCauu-CGacgUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 53907 0.69 0.697061
Target:  5'- gGCGuCCUCGucgccGUcGGCgGCGCCGCCGa -3'
miRNA:   3'- -UGCuGGAGCc----CAuUCGaCGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 60933 0.69 0.667513
Target:  5'- cACGGCCaUCGGc----CUGCACCGCCu -3'
miRNA:   3'- -UGCUGG-AGCCcauucGACGUGGCGGu -5'
10803 5' -58.5 NC_002794.1 + 116147 0.69 0.667513
Target:  5'- gGCGGCCa-GGGc---CUGCACCGCCu -3'
miRNA:   3'- -UGCUGGagCCCauucGACGUGGCGGu -5'
10803 5' -58.5 NC_002794.1 + 162022 0.7 0.651641
Target:  5'- cACGGCCauuuccgauuacccaUCGGGgcgUGAGCcGCACCGCg- -3'
miRNA:   3'- -UGCUGG---------------AGCCC---AUUCGaCGUGGCGgu -5'
10803 5' -58.5 NC_002794.1 + 105418 0.7 0.634736
Target:  5'- uCGGCCUCcaGGGUGgccgccgccgcgccGGCgGCGCCGUCGu -3'
miRNA:   3'- uGCUGGAG--CCCAU--------------UCGaCGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 183862 0.7 0.627772
Target:  5'- cGCGGCCgUCGGGgccaccGCcGaCACCGCCGc -3'
miRNA:   3'- -UGCUGG-AGCCCauu---CGaC-GUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 115045 0.7 0.617826
Target:  5'- uGCGACCgggcggCGGGc-GGCaGCGCCGuCCAg -3'
miRNA:   3'- -UGCUGGa-----GCCCauUCGaCGUGGC-GGU- -5'
10803 5' -58.5 NC_002794.1 + 105729 0.71 0.597971
Target:  5'- gGCGGCCgUCGGGaAAGCgucGuCGCCGUCGu -3'
miRNA:   3'- -UGCUGG-AGCCCaUUCGa--C-GUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 114260 0.71 0.597971
Target:  5'- aGCGucuCCgggggCGGGUcguGCUGCACCaGCCGu -3'
miRNA:   3'- -UGCu--GGa----GCCCAuu-CGACGUGG-CGGU- -5'
10803 5' -58.5 NC_002794.1 + 133534 0.71 0.597971
Target:  5'- uUGGCCgacCGGGUAcGCguugUGCACCGUCAc -3'
miRNA:   3'- uGCUGGa--GCCCAUuCG----ACGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 115279 0.71 0.588076
Target:  5'- aACGGCgUggacacggggaaCGGGgaccGCUGCGCCGCCGu -3'
miRNA:   3'- -UGCUGgA------------GCCCauu-CGACGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 34474 0.71 0.588076
Target:  5'- uGCGcACCUUc---AAGCUGCGCCGCCAg -3'
miRNA:   3'- -UGC-UGGAGcccaUUCGACGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 175200 0.71 0.588076
Target:  5'- uCGGCCUUGGcgucgauguGUAAGCUGUAUCGCg- -3'
miRNA:   3'- uGCUGGAGCC---------CAUUCGACGUGGCGgu -5'
10803 5' -58.5 NC_002794.1 + 189756 0.71 0.578212
Target:  5'- uCGGCaCUCGGuUucGgUGCACCGCCAg -3'
miRNA:   3'- uGCUG-GAGCCcAuuCgACGUGGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.