miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10803 5' -58.5 NC_002794.1 + 8126 0.72 0.52955
Target:  5'- gGCGGCCUCcucGGUGaccGGCgacgGCACCGCUu -3'
miRNA:   3'- -UGCUGGAGc--CCAU---UCGa---CGUGGCGGu -5'
10803 5' -58.5 NC_002794.1 + 10765 0.67 0.799714
Target:  5'- gACGACggCGGcGUgGAGCUGCAgugCGCCAu -3'
miRNA:   3'- -UGCUGgaGCC-CA-UUCGACGUg--GCGGU- -5'
10803 5' -58.5 NC_002794.1 + 17418 0.67 0.808351
Target:  5'- cGCGGCCaUCGcGGUcu-CcGCGCCGCCGg -3'
miRNA:   3'- -UGCUGG-AGC-CCAuucGaCGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 18822 0.66 0.864181
Target:  5'- gGCGACCUCGGccggcgcggaGgagaccucGAGC-GCGCCGUCGc -3'
miRNA:   3'- -UGCUGGAGCC----------Ca-------UUCGaCGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 19953 0.67 0.808351
Target:  5'- -aGACgUgCGGGcuucGAGCUGCGgCCGCCc -3'
miRNA:   3'- ugCUGgA-GCCCa---UUCGACGU-GGCGGu -5'
10803 5' -58.5 NC_002794.1 + 23465 0.68 0.772974
Target:  5'- uCGACgUCGGGgcggagGGGuCUGCcaugaucgcGCCGCCGu -3'
miRNA:   3'- uGCUGgAGCCCa-----UUC-GACG---------UGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 26265 0.67 0.816837
Target:  5'- -aGACCUUGGGggcGGCUcgAUCGCCGg -3'
miRNA:   3'- ugCUGGAGCCCau-UCGAcgUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 34474 0.71 0.588076
Target:  5'- uGCGcACCUUc---AAGCUGCGCCGCCAg -3'
miRNA:   3'- -UGC-UGGAGcccaUUCGACGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 35272 0.68 0.754541
Target:  5'- uGCGGCUgaaacacCGGGUGGGCgucgUGCgcccucggacggACCGCCAg -3'
miRNA:   3'- -UGCUGGa------GCCCAUUCG----ACG------------UGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 37202 0.66 0.841316
Target:  5'- cACGACgUCGGGc-AGCccGCACUGCg- -3'
miRNA:   3'- -UGCUGgAGCCCauUCGa-CGUGGCGgu -5'
10803 5' -58.5 NC_002794.1 + 37723 0.68 0.735698
Target:  5'- cGCGACC-CGc--GAGCggcgGCGCCGCCGg -3'
miRNA:   3'- -UGCUGGaGCccaUUCGa---CGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 38098 0.67 0.797969
Target:  5'- cGCGACCggcgugaagacgCGGGaGAGCcGCGCCaGCUg -3'
miRNA:   3'- -UGCUGGa-----------GCCCaUUCGaCGUGG-CGGu -5'
10803 5' -58.5 NC_002794.1 + 44713 0.71 0.54886
Target:  5'- cGCGACCgCGGcgacGUcGGCcgGCGCCGCCGg -3'
miRNA:   3'- -UGCUGGaGCC----CAuUCGa-CGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 48206 0.66 0.863446
Target:  5'- cCGGCCuUCGaGGUagaggcaGAGCagGCGgCCGCCAu -3'
miRNA:   3'- uGCUGG-AGC-CCA-------UUCGa-CGU-GGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 48446 0.67 0.805776
Target:  5'- gGCGGCCaUCGGGacacAGCcGCcacgucagggcgaaGCCGCCGg -3'
miRNA:   3'- -UGCUGG-AGCCCau--UCGaCG--------------UGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 48632 0.69 0.716516
Target:  5'- aGCGGCCgUCGGGgcccGCga-GCCGCCGc -3'
miRNA:   3'- -UGCUGG-AGCCCauu-CGacgUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 49821 0.68 0.726145
Target:  5'- cGCGGCCacgUCuGaUAGGCgagGCGCCGCCAu -3'
miRNA:   3'- -UGCUGG---AGcCcAUUCGa--CGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 53907 0.69 0.697061
Target:  5'- gGCGuCCUCGucgccGUcGGCgGCGCCGCCGa -3'
miRNA:   3'- -UGCuGGAGCc----CAuUCGaCGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 60860 0.67 0.790047
Target:  5'- gGCGACCUCGGcc-GGCUcucaaguacaucgGCGCCGUg- -3'
miRNA:   3'- -UGCUGGAGCCcauUCGA-------------CGUGGCGgu -5'
10803 5' -58.5 NC_002794.1 + 60933 0.69 0.667513
Target:  5'- cACGGCCaUCGGc----CUGCACCGCCu -3'
miRNA:   3'- -UGCUGG-AGCCcauucGACGUGGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.