miRNA display CGI


Results 21 - 40 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10803 5' -58.5 NC_002794.1 + 62681 0.72 0.528591
Target:  5'- aACcGCCUgCGGGUGcAGCUGUgucggcgGCCGCCGa -3'
miRNA:   3'- -UGcUGGA-GCCCAU-UCGACG-------UGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 74077 0.67 0.808351
Target:  5'- gGCGGCCcuccucgccgagUCGGGacAGCUGCgGCUGCUc -3'
miRNA:   3'- -UGCUGG------------AGCCCauUCGACG-UGGCGGu -5'
10803 5' -58.5 NC_002794.1 + 74434 1.08 0.002642
Target:  5'- gACGACCUCGGGUAAGCUGCACCGCCAc -3'
miRNA:   3'- -UGCUGGAGCCCAUUCGACGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 77661 0.66 0.864181
Target:  5'- uGCGGCCcgCGGGUcuGCgggGuCAUCGUCGg -3'
miRNA:   3'- -UGCUGGa-GCCCAuuCGa--C-GUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 86826 0.74 0.428805
Target:  5'- cGCGACCucgccgggaUCGGGUcGGCgGCcCCGCCGg -3'
miRNA:   3'- -UGCUGG---------AGCCCAuUCGaCGuGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 88739 0.66 0.854482
Target:  5'- gAUGACCUCGGGgucgccgaggaauguGGUgccugGCGUCGCCGg -3'
miRNA:   3'- -UGCUGGAGCCCau-------------UCGa----CGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 91239 0.66 0.864181
Target:  5'- gGCGGCCgUCGGGcUGcGCUcGCGgaCGCCGu -3'
miRNA:   3'- -UGCUGG-AGCCC-AUuCGA-CGUg-GCGGU- -5'
10803 5' -58.5 NC_002794.1 + 94819 0.68 0.754541
Target:  5'- uACuACCggCGGGUGcugcGGCUGgACCGCUg -3'
miRNA:   3'- -UGcUGGa-GCCCAU----UCGACgUGGCGGu -5'
10803 5' -58.5 NC_002794.1 + 96514 0.71 0.568383
Target:  5'- -aGGCCuUUGGGaagGAGCUGCGCCucuGCCGc -3'
miRNA:   3'- ugCUGG-AGCCCa--UUCGACGUGG---CGGU- -5'
10803 5' -58.5 NC_002794.1 + 98937 0.67 0.790933
Target:  5'- cGCGGCCgggaaGGGgcugGGGCUcgugcuggGCGCCGUCGg -3'
miRNA:   3'- -UGCUGGag---CCCa---UUCGA--------CGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 101589 0.67 0.808351
Target:  5'- cGCGGCCgggGGGgcGGgUGCcggcCCGCCGg -3'
miRNA:   3'- -UGCUGGag-CCCauUCgACGu---GGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 104413 0.68 0.754541
Target:  5'- cGCGGCCUCGGccucGGCcGCcggcccggacGCCGCCGc -3'
miRNA:   3'- -UGCUGGAGCCcau-UCGaCG----------UGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 104750 0.68 0.772974
Target:  5'- uCGAUCUCGuGGU-AGCggucgGC-CCGCCGg -3'
miRNA:   3'- uGCUGGAGC-CCAuUCGa----CGuGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 105418 0.7 0.634736
Target:  5'- uCGGCCUCcaGGGUGgccgccgccgcgccGGCgGCGCCGUCGu -3'
miRNA:   3'- uGCUGGAG--CCCAU--------------UCGaCGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 105729 0.71 0.597971
Target:  5'- gGCGGCCgUCGGGaAAGCgucGuCGCCGUCGu -3'
miRNA:   3'- -UGCUGG-AGCCCaUUCGa--C-GUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 107043 0.66 0.833327
Target:  5'- -gGACCcccgcgUCGGaGgcGGCgggcgcgGCGCCGCCGg -3'
miRNA:   3'- ugCUGG------AGCC-CauUCGa------CGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 108191 0.66 0.849126
Target:  5'- -gGACUgcgagCGGc---GCUGCGCCGCCGc -3'
miRNA:   3'- ugCUGGa----GCCcauuCGACGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 108443 0.67 0.825165
Target:  5'- gGCGGCaCUCGcGgcGGCgGC-CCGCCGg -3'
miRNA:   3'- -UGCUG-GAGCcCauUCGaCGuGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 108971 0.67 0.808351
Target:  5'- uACGGCagcugagCGuGGcgAAGCUGCugCGCCu -3'
miRNA:   3'- -UGCUGga-----GC-CCa-UUCGACGugGCGGu -5'
10803 5' -58.5 NC_002794.1 + 113657 0.68 0.772974
Target:  5'- gGCGuCCUCGGcGUccagcgcggcGAGCagGC-CCGCCAc -3'
miRNA:   3'- -UGCuGGAGCC-CA----------UUCGa-CGuGGCGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.