miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10803 5' -58.5 NC_002794.1 + 194837 0.66 0.833327
Target:  5'- cGCGGCC-CGGcGUcuccAGCcGCACCGUCu -3'
miRNA:   3'- -UGCUGGaGCC-CAu---UCGaCGUGGCGGu -5'
10803 5' -58.5 NC_002794.1 + 194514 0.68 0.754541
Target:  5'- cGCGGCC-CGcGUGccgccggcccAGCaGCGCCGCCAg -3'
miRNA:   3'- -UGCUGGaGCcCAU----------UCGaCGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 193745 0.66 0.864181
Target:  5'- cGCGGCUUCGGc-GAGCg--ACCGCCGg -3'
miRNA:   3'- -UGCUGGAGCCcaUUCGacgUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 190966 0.66 0.849126
Target:  5'- aGCG-CCUCGGGgcAGCagagcagGCAgCGCg- -3'
miRNA:   3'- -UGCuGGAGCCCauUCGa------CGUgGCGgu -5'
10803 5' -58.5 NC_002794.1 + 189756 0.71 0.578212
Target:  5'- uCGGCaCUCGGuUucGgUGCACCGCCAg -3'
miRNA:   3'- uGCUG-GAGCCcAuuCgACGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 186947 0.67 0.782017
Target:  5'- cACGGCCccCGGGcc-GCUGgcCGCCGCCu -3'
miRNA:   3'- -UGCUGGa-GCCCauuCGAC--GUGGCGGu -5'
10803 5' -58.5 NC_002794.1 + 183862 0.7 0.627772
Target:  5'- cGCGGCCgUCGGGgccaccGCcGaCACCGCCGc -3'
miRNA:   3'- -UGCUGG-AGCCCauu---CGaC-GUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 176739 0.66 0.841316
Target:  5'- uGCGACCUgUGGGUcuGCgGCAUCcCCGa -3'
miRNA:   3'- -UGCUGGA-GCCCAuuCGaCGUGGcGGU- -5'
10803 5' -58.5 NC_002794.1 + 175200 0.71 0.588076
Target:  5'- uCGGCCUUGGcgucgauguGUAAGCUGUAUCGCg- -3'
miRNA:   3'- uGCUGGAGCC---------CAUUCGACGUGGCGgu -5'
10803 5' -58.5 NC_002794.1 + 162022 0.7 0.651641
Target:  5'- cACGGCCauuuccgauuacccaUCGGGgcgUGAGCcGCACCGCg- -3'
miRNA:   3'- -UGCUGG---------------AGCCC---AUUCGaCGUGGCGgu -5'
10803 5' -58.5 NC_002794.1 + 152103 0.66 0.849126
Target:  5'- uACcGCCgucUGGGgcuuGCUGCGCCGCUc -3'
miRNA:   3'- -UGcUGGa--GCCCauu-CGACGUGGCGGu -5'
10803 5' -58.5 NC_002794.1 + 151677 0.67 0.808351
Target:  5'- gACGACCgaGGGUAcuugGGUcGCcCCGCCGg -3'
miRNA:   3'- -UGCUGGagCCCAU----UCGaCGuGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 149703 0.67 0.782017
Target:  5'- -gGGCCgccuggCGGGUGGGCcGC-CUGCCu -3'
miRNA:   3'- ugCUGGa-----GCCCAUUCGaCGuGGCGGu -5'
10803 5' -58.5 NC_002794.1 + 141521 0.67 0.808351
Target:  5'- uACGACgCcUGGGcGGGCUGC-UCGCCGa -3'
miRNA:   3'- -UGCUG-GaGCCCaUUCGACGuGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 141418 0.73 0.464207
Target:  5'- gAUGACCUCGGGggcGGCggggGCGCCgggggcGCCGg -3'
miRNA:   3'- -UGCUGGAGCCCau-UCGa---CGUGG------CGGU- -5'
10803 5' -58.5 NC_002794.1 + 137875 0.72 0.510495
Target:  5'- uGCGGCgUCuGGUGGGCgaUGC-CCGCCAg -3'
miRNA:   3'- -UGCUGgAGcCCAUUCG--ACGuGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 134593 0.66 0.836544
Target:  5'- -gGACCUCGGGccgAcuccggaucccgccgAGUUG-ACCGCCAu -3'
miRNA:   3'- ugCUGGAGCCCa--U---------------UCGACgUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 133534 0.71 0.597971
Target:  5'- uUGGCCgacCGGGUAcGCguugUGCACCGUCAc -3'
miRNA:   3'- uGCUGGa--GCCCAUuCG----ACGUGGCGGU- -5'
10803 5' -58.5 NC_002794.1 + 131549 0.66 0.864181
Target:  5'- cACGGCCUCGcccguGGUcGGCgcgGCGCCcGUCu -3'
miRNA:   3'- -UGCUGGAGC-----CCAuUCGa--CGUGG-CGGu -5'
10803 5' -58.5 NC_002794.1 + 125825 0.72 0.491732
Target:  5'- uGCGuCCUCGGcGcccugcuGCUGCGCUGCCGg -3'
miRNA:   3'- -UGCuGGAGCC-Cauu----CGACGUGGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.