miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10804 3' -61.6 NC_002794.1 + 154383 0.66 0.747181
Target:  5'- gGCGGCggGCaCGCCCguUCGcGUGGuGCCGg -3'
miRNA:   3'- -CGCCGa-CGaGUGGG--AGCuCGUC-CGGC- -5'
10804 3' -61.6 NC_002794.1 + 113675 0.66 0.747181
Target:  5'- cGCGGCgagcagGCccgcCACCgUCG-GCAGcGCCa -3'
miRNA:   3'- -CGCCGa-----CGa---GUGGgAGCuCGUC-CGGc -5'
10804 3' -61.6 NC_002794.1 + 100798 0.66 0.747181
Target:  5'- cGCGGCcGCUUcuGCgCCUacgugcCGGGCggcggGGGCCGg -3'
miRNA:   3'- -CGCCGaCGAG--UG-GGA------GCUCG-----UCCGGC- -5'
10804 3' -61.6 NC_002794.1 + 94202 0.66 0.741655
Target:  5'- aGCGGUUGCgcuugugacgguggCGgCgacgggCGGGCGGGCCGg -3'
miRNA:   3'- -CGCCGACGa-------------GUgGga----GCUCGUCCGGC- -5'
10804 3' -61.6 NC_002794.1 + 147986 0.66 0.737954
Target:  5'- gGCGGUgucccUGCUgGCCUUCGuccGCGucGGCCu -3'
miRNA:   3'- -CGCCG-----ACGAgUGGGAGCu--CGU--CCGGc -5'
10804 3' -61.6 NC_002794.1 + 21932 0.66 0.737954
Target:  5'- gGCGGCgGCgcggCGCUCgUCGA--AGGCCGu -3'
miRNA:   3'- -CGCCGaCGa---GUGGG-AGCUcgUCCGGC- -5'
10804 3' -61.6 NC_002794.1 + 34085 0.66 0.728643
Target:  5'- gGCGGCcggGCa-GCCgUCGGGCGGcCCGg -3'
miRNA:   3'- -CGCCGa--CGagUGGgAGCUCGUCcGGC- -5'
10804 3' -61.6 NC_002794.1 + 61904 0.66 0.719257
Target:  5'- cGCGGCgaGCgcagcgacgucgUCACCCUCGAGgAGaUCGc -3'
miRNA:   3'- -CGCCGa-CG------------AGUGGGAGCUCgUCcGGC- -5'
10804 3' -61.6 NC_002794.1 + 112818 0.66 0.719257
Target:  5'- aGCGuCUGCUCGgCCgcCGAGUAcGGCUGc -3'
miRNA:   3'- -CGCcGACGAGUgGGa-GCUCGU-CCGGC- -5'
10804 3' -61.6 NC_002794.1 + 139010 0.66 0.709804
Target:  5'- uGCGGCUgaagaGCUCGCCg-CG-GCGaaacuGGCCGa -3'
miRNA:   3'- -CGCCGA-----CGAGUGGgaGCuCGU-----CCGGC- -5'
10804 3' -61.6 NC_002794.1 + 78310 0.66 0.709804
Target:  5'- cUGGCU-CUCGCCCUCucccggcgcgacGGGCGGaggcGCCGg -3'
miRNA:   3'- cGCCGAcGAGUGGGAG------------CUCGUC----CGGC- -5'
10804 3' -61.6 NC_002794.1 + 59360 0.66 0.708856
Target:  5'- aCGGCUGCUgCGCCaccaCGGcgccgcgccugcuGCGGGCCu -3'
miRNA:   3'- cGCCGACGA-GUGGga--GCU-------------CGUCCGGc -5'
10804 3' -61.6 NC_002794.1 + 34249 0.66 0.708856
Target:  5'- cGCGGCUGC-CGCCgCaggCGGaccgcgcGCAGGCgGc -3'
miRNA:   3'- -CGCCGACGaGUGG-Ga--GCU-------CGUCCGgC- -5'
10804 3' -61.6 NC_002794.1 + 192988 0.66 0.700292
Target:  5'- cGCGGUcGCccUCGCCCggCGuguGCAGcGCCa -3'
miRNA:   3'- -CGCCGaCG--AGUGGGa-GCu--CGUC-CGGc -5'
10804 3' -61.6 NC_002794.1 + 183160 0.66 0.700292
Target:  5'- cGCGGCcGggCugCC-CGAGCcGGUCGg -3'
miRNA:   3'- -CGCCGaCgaGugGGaGCUCGuCCGGC- -5'
10804 3' -61.6 NC_002794.1 + 32836 0.66 0.700292
Target:  5'- cGCGGCcgGCUCAUCgguagCG-GCAgcGGCCGa -3'
miRNA:   3'- -CGCCGa-CGAGUGGga---GCuCGU--CCGGC- -5'
10804 3' -61.6 NC_002794.1 + 113374 0.66 0.700292
Target:  5'- aCGGgUGCgggcCGCCgUCGuGCAGGCg- -3'
miRNA:   3'- cGCCgACGa---GUGGgAGCuCGUCCGgc -5'
10804 3' -61.6 NC_002794.1 + 17257 0.66 0.700292
Target:  5'- gGCGGCgacccgGCUCGuCaCC-CGGGCAcGCCGc -3'
miRNA:   3'- -CGCCGa-----CGAGU-G-GGaGCUCGUcCGGC- -5'
10804 3' -61.6 NC_002794.1 + 114725 0.66 0.700292
Target:  5'- gGCGGCgGCUCcggguUCgUCGAGcCGGcGCCGc -3'
miRNA:   3'- -CGCCGaCGAGu----GGgAGCUC-GUC-CGGC- -5'
10804 3' -61.6 NC_002794.1 + 70273 0.67 0.690728
Target:  5'- -aGGCcGCgaaGgCCggaGAGCAGGCCGg -3'
miRNA:   3'- cgCCGaCGag-UgGGag-CUCGUCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.