miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10804 3' -61.6 NC_002794.1 + 74106 1.09 0.00122
Target:  5'- uGCGGCUGCUCACCCUCGAGCAGGCCGc -3'
miRNA:   3'- -CGCCGACGAGUGGGAGCUCGUCCGGC- -5'
10804 3' -61.6 NC_002794.1 + 123557 0.84 0.068869
Target:  5'- cGCgGGCUGUUCGCCUUCGAGCGccacGGCCGc -3'
miRNA:   3'- -CG-CCGACGAGUGGGAGCUCGU----CCGGC- -5'
10804 3' -61.6 NC_002794.1 + 40479 0.78 0.178623
Target:  5'- gGCGGCUcaucgaacggccggcGCUCGCCgCUCGAGuCAcGGCCGc -3'
miRNA:   3'- -CGCCGA---------------CGAGUGG-GAGCUC-GU-CCGGC- -5'
10804 3' -61.6 NC_002794.1 + 43392 0.75 0.251269
Target:  5'- aCGGCgUGCUCcagcACCCcCGGGCAGGuCCGg -3'
miRNA:   3'- cGCCG-ACGAG----UGGGaGCUCGUCC-GGC- -5'
10804 3' -61.6 NC_002794.1 + 79676 0.75 0.262932
Target:  5'- cGCGcGCUGCU--UCCUCGAGCagcucGGGCCGc -3'
miRNA:   3'- -CGC-CGACGAguGGGAGCUCG-----UCCGGC- -5'
10804 3' -61.6 NC_002794.1 + 136441 0.75 0.262932
Target:  5'- gGCGGCUGCgucCGCUgUUGGGuCAGGUCGg -3'
miRNA:   3'- -CGCCGACGa--GUGGgAGCUC-GUCCGGC- -5'
10804 3' -61.6 NC_002794.1 + 122452 0.75 0.275031
Target:  5'- aGCGGCUGCUgggcucggugaaCGCgCUCGccCAGGCCGg -3'
miRNA:   3'- -CGCCGACGA------------GUGgGAGCucGUCCGGC- -5'
10804 3' -61.6 NC_002794.1 + 183617 0.74 0.281245
Target:  5'- cGCGGCcgGCgcccccgCGCCCccgacUCGAGCAgGGCCGc -3'
miRNA:   3'- -CGCCGa-CGa------GUGGG-----AGCUCGU-CCGGC- -5'
10804 3' -61.6 NC_002794.1 + 122976 0.74 0.300557
Target:  5'- gGUGGCUGUacgCGCgCCUgGuGCGGGCCGu -3'
miRNA:   3'- -CGCCGACGa--GUG-GGAgCuCGUCCGGC- -5'
10804 3' -61.6 NC_002794.1 + 145324 0.74 0.307218
Target:  5'- cGCGGCggGCggCGCUCgggccCGAGCGGGCCc -3'
miRNA:   3'- -CGCCGa-CGa-GUGGGa----GCUCGUCCGGc -5'
10804 3' -61.6 NC_002794.1 + 68708 0.73 0.320876
Target:  5'- cGCGaGCUGCUCGCCCcaccccgggucuUCGAacacaccccGgAGGCCGa -3'
miRNA:   3'- -CGC-CGACGAGUGGG------------AGCU---------CgUCCGGC- -5'
10804 3' -61.6 NC_002794.1 + 130502 0.73 0.320876
Target:  5'- aGCGaGUgcgcCUCGCCCacUCGAGCGGGCUGa -3'
miRNA:   3'- -CGC-CGac--GAGUGGG--AGCUCGUCCGGC- -5'
10804 3' -61.6 NC_002794.1 + 41464 0.73 0.342207
Target:  5'- cCGaCUGCUCGCUCUCGuucaaauacAGCAGGUCGg -3'
miRNA:   3'- cGCcGACGAGUGGGAGC---------UCGUCCGGC- -5'
10804 3' -61.6 NC_002794.1 + 56465 0.72 0.372209
Target:  5'- gGCGcGCUGCgCGCCUUCGAaacgAGGCCGg -3'
miRNA:   3'- -CGC-CGACGaGUGGGAGCUcg--UCCGGC- -5'
10804 3' -61.6 NC_002794.1 + 70203 0.72 0.387866
Target:  5'- aGCGGagauccaGCUCGCCCggacggUCGGGCGGGCgGc -3'
miRNA:   3'- -CGCCga-----CGAGUGGG------AGCUCGUCCGgC- -5'
10804 3' -61.6 NC_002794.1 + 149698 0.72 0.40395
Target:  5'- cGCGGggGC-CGCCUggCGGGUGGGCCGc -3'
miRNA:   3'- -CGCCgaCGaGUGGGa-GCUCGUCCGGC- -5'
10804 3' -61.6 NC_002794.1 + 95837 0.71 0.412149
Target:  5'- aGCGGCgGCggCGgCCggggaggcggCGGGCGGGCCGu -3'
miRNA:   3'- -CGCCGaCGa-GUgGGa---------GCUCGUCCGGC- -5'
10804 3' -61.6 NC_002794.1 + 51278 0.71 0.42045
Target:  5'- gGCaGGCgcgGCcCGCCCgaaCGGGCAGGCuCGa -3'
miRNA:   3'- -CG-CCGa--CGaGUGGGa--GCUCGUCCG-GC- -5'
10804 3' -61.6 NC_002794.1 + 115592 0.71 0.428851
Target:  5'- aGCGGCUgcggucgacccGCUCGCCCggCGccgggaGGCGGGUCa -3'
miRNA:   3'- -CGCCGA-----------CGAGUGGGa-GC------UCGUCCGGc -5'
10804 3' -61.6 NC_002794.1 + 32252 0.71 0.428851
Target:  5'- uGCaGCUGCUgGCgCUCGAcgGCcGGCCGa -3'
miRNA:   3'- -CGcCGACGAgUGgGAGCU--CGuCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.