miRNA display CGI


Results 21 - 40 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10804 3' -61.6 NC_002794.1 + 70273 0.67 0.690728
Target:  5'- -aGGCcGCgaaGgCCggaGAGCAGGCCGg -3'
miRNA:   3'- cgCCGaCGag-UgGGag-CUCGUCCGGC- -5'
10804 3' -61.6 NC_002794.1 + 137151 0.67 0.690728
Target:  5'- cCGGCcgGC-CGCCCUCG-GUcccGGCCGc -3'
miRNA:   3'- cGCCGa-CGaGUGGGAGCuCGu--CCGGC- -5'
10804 3' -61.6 NC_002794.1 + 12372 0.67 0.681119
Target:  5'- uCGGCgUGCUCGCCUgcCGcGCucgccuGGCCGa -3'
miRNA:   3'- cGCCG-ACGAGUGGGa-GCuCGu-----CCGGC- -5'
10804 3' -61.6 NC_002794.1 + 48595 0.67 0.681119
Target:  5'- aGCGGC-GCgUCGCCgUCG-GCGucGGCCu -3'
miRNA:   3'- -CGCCGaCG-AGUGGgAGCuCGU--CCGGc -5'
10804 3' -61.6 NC_002794.1 + 120815 0.67 0.681119
Target:  5'- aGCGGCaGCUgcgacaCGCUCUCGAcGgGGGCUa -3'
miRNA:   3'- -CGCCGaCGA------GUGGGAGCU-CgUCCGGc -5'
10804 3' -61.6 NC_002794.1 + 188999 0.67 0.681119
Target:  5'- aGCGGCaGCUCuCCaggUCGcGaCAGGCCa -3'
miRNA:   3'- -CGCCGaCGAGuGGg--AGCuC-GUCCGGc -5'
10804 3' -61.6 NC_002794.1 + 39561 0.67 0.680156
Target:  5'- uGCGGCgcccuguaccccgUGCUCAaguaCGAGCGGGUCGc -3'
miRNA:   3'- -CGCCG-------------ACGAGUgggaGCUCGUCCGGC- -5'
10804 3' -61.6 NC_002794.1 + 152586 0.67 0.671475
Target:  5'- gGCGGCcGC-CAcguCCCUgCGGcGCGGGCCc -3'
miRNA:   3'- -CGCCGaCGaGU---GGGA-GCU-CGUCCGGc -5'
10804 3' -61.6 NC_002794.1 + 121316 0.67 0.661801
Target:  5'- uCGGCgGUUgGCCCUCGAggcgccGCGcGGCUGa -3'
miRNA:   3'- cGCCGaCGAgUGGGAGCU------CGU-CCGGC- -5'
10804 3' -61.6 NC_002794.1 + 128160 0.67 0.661801
Target:  5'- aCGGCgGCUCGCgCCgCGGaCGGGUCGg -3'
miRNA:   3'- cGCCGaCGAGUG-GGaGCUcGUCCGGC- -5'
10804 3' -61.6 NC_002794.1 + 19934 0.67 0.658895
Target:  5'- cGCGcacGCUGUUCACggaagacgugcgggCUUCGAGCugcGGCCGc -3'
miRNA:   3'- -CGC---CGACGAGUG--------------GGAGCUCGu--CCGGC- -5'
10804 3' -61.6 NC_002794.1 + 566 0.67 0.657925
Target:  5'- cGCGGCgguggcaggucucGUUUACCCUCGGuccGUucguGGCCGg -3'
miRNA:   3'- -CGCCGa------------CGAGUGGGAGCU---CGu---CCGGC- -5'
10804 3' -61.6 NC_002794.1 + 147471 0.67 0.652107
Target:  5'- cGCGcGCgacGaCUCGCUgUUCGAGCuGGCCGa -3'
miRNA:   3'- -CGC-CGa--C-GAGUGG-GAGCUCGuCCGGC- -5'
10804 3' -61.6 NC_002794.1 + 117369 0.67 0.650165
Target:  5'- aGCGGCggGC-CGCCUgcacggucgcggCGaAGCGGGCCu -3'
miRNA:   3'- -CGCCGa-CGaGUGGGa-----------GC-UCGUCCGGc -5'
10804 3' -61.6 NC_002794.1 + 38463 0.67 0.646282
Target:  5'- cGCGGCcGCggcgCGCCCUuuaUGGGCGGaggaagcgcggcggcGCCGg -3'
miRNA:   3'- -CGCCGaCGa---GUGGGA---GCUCGUC---------------CGGC- -5'
10804 3' -61.6 NC_002794.1 + 53136 0.67 0.642397
Target:  5'- cGCGGC-GCUCAgCC-CG-GCauAGGCCa -3'
miRNA:   3'- -CGCCGaCGAGUgGGaGCuCG--UCCGGc -5'
10804 3' -61.6 NC_002794.1 + 110278 0.67 0.642397
Target:  5'- gGCGGCcGC-CGUCCUCGGGCccgAGaGCCGc -3'
miRNA:   3'- -CGCCGaCGaGUGGGAGCUCG---UC-CGGC- -5'
10804 3' -61.6 NC_002794.1 + 125766 0.67 0.642397
Target:  5'- gGCGGCUcGC-CACCCggcugCGAGCgcucaAGaGCUGg -3'
miRNA:   3'- -CGCCGA-CGaGUGGGa----GCUCG-----UC-CGGC- -5'
10804 3' -61.6 NC_002794.1 + 121975 0.67 0.642397
Target:  5'- uGCGGCUcGgUC-CCgC-CGAGCGcGGCCGg -3'
miRNA:   3'- -CGCCGA-CgAGuGG-GaGCUCGU-CCGGC- -5'
10804 3' -61.6 NC_002794.1 + 30934 0.67 0.642397
Target:  5'- -aGGCUGCgccCGCCgCgccgCGAGaCAGGCaCGg -3'
miRNA:   3'- cgCCGACGa--GUGG-Ga---GCUC-GUCCG-GC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.