miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10804 3' -61.6 NC_002794.1 + 566 0.67 0.657925
Target:  5'- cGCGGCgguggcaggucucGUUUACCCUCGGuccGUucguGGCCGg -3'
miRNA:   3'- -CGCCGa------------CGAGUGGGAGCU---CGu---CCGGC- -5'
10804 3' -61.6 NC_002794.1 + 4575 0.68 0.574601
Target:  5'- uCGGCU-CUCACCCgagaaucaaCGGGgGGGCCu -3'
miRNA:   3'- cGCCGAcGAGUGGGa--------GCUCgUCCGGc -5'
10804 3' -61.6 NC_002794.1 + 12372 0.67 0.681119
Target:  5'- uCGGCgUGCUCGCCUgcCGcGCucgccuGGCCGa -3'
miRNA:   3'- cGCCG-ACGAGUGGGa-GCuCGu-----CCGGC- -5'
10804 3' -61.6 NC_002794.1 + 17257 0.66 0.700292
Target:  5'- gGCGGCgacccgGCUCGuCaCC-CGGGCAcGCCGc -3'
miRNA:   3'- -CGCCGa-----CGAGU-G-GGaGCUCGUcCGGC- -5'
10804 3' -61.6 NC_002794.1 + 19358 0.69 0.536533
Target:  5'- cGCcGCccGCccCGCCCggaUCGGGCGGGCCGg -3'
miRNA:   3'- -CGcCGa-CGa-GUGGG---AGCUCGUCCGGC- -5'
10804 3' -61.6 NC_002794.1 + 19934 0.67 0.658895
Target:  5'- cGCGcacGCUGUUCACggaagacgugcgggCUUCGAGCugcGGCCGc -3'
miRNA:   3'- -CGC---CGACGAGUG--------------GGAGCUCGu--CCGGC- -5'
10804 3' -61.6 NC_002794.1 + 21932 0.66 0.737954
Target:  5'- gGCGGCgGCgcggCGCUCgUCGA--AGGCCGu -3'
miRNA:   3'- -CGCCGaCGa---GUGGG-AGCUcgUCCGGC- -5'
10804 3' -61.6 NC_002794.1 + 22921 0.7 0.508567
Target:  5'- cGCGGCcGCcaaaccggCACCCaUCG-GCuGGCCGa -3'
miRNA:   3'- -CGCCGaCGa-------GUGGG-AGCuCGuCCGGC- -5'
10804 3' -61.6 NC_002794.1 + 30934 0.67 0.642397
Target:  5'- -aGGCUGCgccCGCCgCgccgCGAGaCAGGCaCGg -3'
miRNA:   3'- cgCCGACGa--GUGG-Ga---GCUC-GUCCG-GC- -5'
10804 3' -61.6 NC_002794.1 + 32252 0.71 0.428851
Target:  5'- uGCaGCUGCUgGCgCUCGAcgGCcGGCCGa -3'
miRNA:   3'- -CGcCGACGAgUGgGAGCU--CGuCCGGC- -5'
10804 3' -61.6 NC_002794.1 + 32836 0.66 0.700292
Target:  5'- cGCGGCcgGCUCAUCgguagCG-GCAgcGGCCGa -3'
miRNA:   3'- -CGCCGa-CGAGUGGga---GCuCGU--CCGGC- -5'
10804 3' -61.6 NC_002794.1 + 34085 0.66 0.728643
Target:  5'- gGCGGCcggGCa-GCCgUCGGGCGGcCCGg -3'
miRNA:   3'- -CGCCGa--CGagUGGgAGCUCGUCcGGC- -5'
10804 3' -61.6 NC_002794.1 + 34249 0.66 0.708856
Target:  5'- cGCGGCUGC-CGCCgCaggCGGaccgcgcGCAGGCgGc -3'
miRNA:   3'- -CGCCGACGaGUGG-Ga--GCU-------CGUCCGgC- -5'
10804 3' -61.6 NC_002794.1 + 34769 0.7 0.490268
Target:  5'- cGCGGCacgGC-CGCCCgcgccagcCGAGUcGGCCGa -3'
miRNA:   3'- -CGCCGa--CGaGUGGGa-------GCUCGuCCGGC- -5'
10804 3' -61.6 NC_002794.1 + 38413 0.7 0.49938
Target:  5'- cCGGCgagcGCUCGCCgaCUCcauggcGGCGGGCCGg -3'
miRNA:   3'- cGCCGa---CGAGUGG--GAGc-----UCGUCCGGC- -5'
10804 3' -61.6 NC_002794.1 + 38463 0.67 0.646282
Target:  5'- cGCGGCcGCggcgCGCCCUuuaUGGGCGGaggaagcgcggcggcGCCGg -3'
miRNA:   3'- -CGCCGaCGa---GUGGGA---GCUCGUC---------------CGGC- -5'
10804 3' -61.6 NC_002794.1 + 39561 0.67 0.680156
Target:  5'- uGCGGCgcccuguaccccgUGCUCAaguaCGAGCGGGUCGc -3'
miRNA:   3'- -CGCCG-------------ACGAGUgggaGCUCGUCCGGC- -5'
10804 3' -61.6 NC_002794.1 + 40479 0.78 0.178623
Target:  5'- gGCGGCUcaucgaacggccggcGCUCGCCgCUCGAGuCAcGGCCGc -3'
miRNA:   3'- -CGCCGA---------------CGAGUGG-GAGCUC-GU-CCGGC- -5'
10804 3' -61.6 NC_002794.1 + 41018 0.7 0.463414
Target:  5'- gGCGGagacgagGCgCACCCUCG-GCAGGUCc -3'
miRNA:   3'- -CGCCga-----CGaGUGGGAGCuCGUCCGGc -5'
10804 3' -61.6 NC_002794.1 + 41464 0.73 0.342207
Target:  5'- cCGaCUGCUCGCUCUCGuucaaauacAGCAGGUCGg -3'
miRNA:   3'- cGCcGACGAGUGGGAGC---------UCGUCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.