miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10804 5' -56.9 NC_002794.1 + 99285 0.66 0.917953
Target:  5'- -gCUCCCgGGcucuuccgCGACcGCcgCCACCAa -3'
miRNA:   3'- caGAGGGaCCa-------GCUGuCGuaGGUGGU- -5'
10804 5' -56.9 NC_002794.1 + 178648 0.66 0.917391
Target:  5'- -gCUUUCUGGUCGGCGGUccuccagAUCUaACCAu -3'
miRNA:   3'- caGAGGGACCAGCUGUCG-------UAGG-UGGU- -5'
10804 5' -56.9 NC_002794.1 + 31381 0.66 0.912227
Target:  5'- -cCUCCCcgucGUCGGCGGCc-CCGCCGc -3'
miRNA:   3'- caGAGGGac--CAGCUGUCGuaGGUGGU- -5'
10804 5' -56.9 NC_002794.1 + 7907 0.66 0.912227
Target:  5'- -cCUCCCcucUGGcCGAgAGCAggaCCACCc -3'
miRNA:   3'- caGAGGG---ACCaGCUgUCGUa--GGUGGu -5'
10804 5' -56.9 NC_002794.1 + 193645 0.66 0.893683
Target:  5'- cGUUUCCCcGGUCGGCuccGGCGcgCC-CCGa -3'
miRNA:   3'- -CAGAGGGaCCAGCUG---UCGUa-GGuGGU- -5'
10804 5' -56.9 NC_002794.1 + 149243 0.67 0.880209
Target:  5'- cGUCgCCggGGUCG-CGGCG-CCACCAc -3'
miRNA:   3'- -CAGaGGgaCCAGCuGUCGUaGGUGGU- -5'
10804 5' -56.9 NC_002794.1 + 86831 0.67 0.880209
Target:  5'- -cCUCgCCgggaucgGGUCGGCGGCc-CCGCCGg -3'
miRNA:   3'- caGAG-GGa------CCAGCUGUCGuaGGUGGU- -5'
10804 5' -56.9 NC_002794.1 + 101956 0.67 0.880209
Target:  5'- -cCUgCCUGcccgUGGCGGCGUCCAUCAc -3'
miRNA:   3'- caGAgGGACca--GCUGUCGUAGGUGGU- -5'
10804 5' -56.9 NC_002794.1 + 29204 0.67 0.850744
Target:  5'- cGUCcgUCCggcGGUCGGCGGCcgucggCCGCCGa -3'
miRNA:   3'- -CAGa-GGGa--CCAGCUGUCGua----GGUGGU- -5'
10804 5' -56.9 NC_002794.1 + 30982 0.67 0.850744
Target:  5'- -cCUCCCcGG-CGACGGCGgggucUUCGCCGg -3'
miRNA:   3'- caGAGGGaCCaGCUGUCGU-----AGGUGGU- -5'
10804 5' -56.9 NC_002794.1 + 88812 0.68 0.842884
Target:  5'- -gUUCCCgu-UCGGCuaAGCGUCCACCGg -3'
miRNA:   3'- caGAGGGaccAGCUG--UCGUAGGUGGU- -5'
10804 5' -56.9 NC_002794.1 + 79869 0.68 0.834839
Target:  5'- aGUC-CCgCUGGccCGACAGCAcguacgUCCACUAc -3'
miRNA:   3'- -CAGaGG-GACCa-GCUGUCGU------AGGUGGU- -5'
10804 5' -56.9 NC_002794.1 + 105488 0.69 0.79209
Target:  5'- cGUCUCC--GGUCGugGaGCcgCCGCCGc -3'
miRNA:   3'- -CAGAGGgaCCAGCugU-CGuaGGUGGU- -5'
10804 5' -56.9 NC_002794.1 + 59647 0.69 0.78309
Target:  5'- cUCUCCCcGGUCGccACGGCGcugcagagCCGCCu -3'
miRNA:   3'- cAGAGGGaCCAGC--UGUCGUa-------GGUGGu -5'
10804 5' -56.9 NC_002794.1 + 111608 0.69 0.764705
Target:  5'- aUCUCCCaGGcCGGCGGgG-CCGCCGc -3'
miRNA:   3'- cAGAGGGaCCaGCUGUCgUaGGUGGU- -5'
10804 5' -56.9 NC_002794.1 + 110255 0.69 0.755337
Target:  5'- gGUUUCCCgcgcGGcgucgCGACGGCggCCGCCGu -3'
miRNA:   3'- -CAGAGGGa---CCa----GCUGUCGuaGGUGGU- -5'
10804 5' -56.9 NC_002794.1 + 143026 0.71 0.657322
Target:  5'- gGUCggCCgGGUCGACGuGCAgggCCGCCAg -3'
miRNA:   3'- -CAGagGGaCCAGCUGU-CGUa--GGUGGU- -5'
10804 5' -56.9 NC_002794.1 + 22896 0.71 0.647276
Target:  5'- -cCUCCCguUGGUgGACGGCGgcgaccgcggCCGCCAa -3'
miRNA:   3'- caGAGGG--ACCAgCUGUCGUa---------GGUGGU- -5'
10804 5' -56.9 NC_002794.1 + 74140 1.08 0.003331
Target:  5'- cGUCUCCCUGGUCGACAGCAUCCACCAc -3'
miRNA:   3'- -CAGAGGGACCAGCUGUCGUAGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.