miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10805 3' -58.9 NC_002794.1 + 59925 0.66 0.87524
Target:  5'- gCCCGCgUGCAggaccucuuccgcgUCUUCcCCAUgcacgucuaccggcaCCCCGAg -3'
miRNA:   3'- gGGGCG-ACGU--------------AGAAGuGGUG---------------GGGGCU- -5'
10805 3' -58.9 NC_002794.1 + 44024 0.66 0.874547
Target:  5'- gUCCGCagacCGUCgcUCuCCGCCCCCGGg -3'
miRNA:   3'- gGGGCGac--GUAGa-AGuGGUGGGGGCU- -5'
10805 3' -58.9 NC_002794.1 + 81299 0.66 0.874547
Target:  5'- aCCUGCUGCAc---CACuCACCuCCCGu -3'
miRNA:   3'- gGGGCGACGUagaaGUG-GUGG-GGGCu -5'
10805 3' -58.9 NC_002794.1 + 82922 0.66 0.874547
Target:  5'- gCCCCGCcGCcg--UCGCCGCUCCg-- -3'
miRNA:   3'- -GGGGCGaCGuagaAGUGGUGGGGgcu -5'
10805 3' -58.9 NC_002794.1 + 110258 0.66 0.874547
Target:  5'- uUCCCGCgcgGCGUCgcgacggcgGCCGCCguccucgggCCCGAg -3'
miRNA:   3'- -GGGGCGa--CGUAGaag------UGGUGG---------GGGCU- -5'
10805 3' -58.9 NC_002794.1 + 193950 0.66 0.874547
Target:  5'- gCCCCGCcGCcacCgcCGCCACCgCCGu -3'
miRNA:   3'- -GGGGCGaCGua-GaaGUGGUGGgGGCu -5'
10805 3' -58.9 NC_002794.1 + 121241 0.66 0.874547
Target:  5'- uCgCCGCUGCcgC--CGCCGCCgCCGc -3'
miRNA:   3'- -GgGGCGACGuaGaaGUGGUGGgGGCu -5'
10805 3' -58.9 NC_002794.1 + 60045 0.66 0.872454
Target:  5'- gUCUCGCUGCucacCUUCggccgccgcaccguGCCGCCgCCCGc -3'
miRNA:   3'- -GGGGCGACGua--GAAG--------------UGGUGG-GGGCu -5'
10805 3' -58.9 NC_002794.1 + 15539 0.66 0.867502
Target:  5'- gUCUCGCcGCGUUUUCucucCCGCUCUCGGc -3'
miRNA:   3'- -GGGGCGaCGUAGAAGu---GGUGGGGGCU- -5'
10805 3' -58.9 NC_002794.1 + 11392 0.66 0.867502
Target:  5'- aCCCaCGCcgGCua---CACCACCCCCc- -3'
miRNA:   3'- -GGG-GCGa-CGuagaaGUGGUGGGGGcu -5'
10805 3' -58.9 NC_002794.1 + 68861 0.66 0.867502
Target:  5'- aCCCCGgaGC-UCgggcUCGCCGgCCUCGc -3'
miRNA:   3'- -GGGGCgaCGuAGa---AGUGGUgGGGGCu -5'
10805 3' -58.9 NC_002794.1 + 193881 0.66 0.867502
Target:  5'- gCCCCGCgucGCc-CUcCACCGCCgCCGc -3'
miRNA:   3'- -GGGGCGa--CGuaGAaGUGGUGGgGGCu -5'
10805 3' -58.9 NC_002794.1 + 183887 0.66 0.867502
Target:  5'- -aCCGCcGCcg--UCACCGCCgCCGAc -3'
miRNA:   3'- ggGGCGaCGuagaAGUGGUGGgGGCU- -5'
10805 3' -58.9 NC_002794.1 + 99184 0.66 0.867502
Target:  5'- aCCaCCGa-GUAUCUggauUCcCCGCCCCCGu -3'
miRNA:   3'- -GG-GGCgaCGUAGA----AGuGGUGGGGGCu -5'
10805 3' -58.9 NC_002794.1 + 194420 0.66 0.867502
Target:  5'- gCCaCCGCcGUAaacacgUCGuCCGCCCCCGGc -3'
miRNA:   3'- -GG-GGCGaCGUaga---AGU-GGUGGGGGCU- -5'
10805 3' -58.9 NC_002794.1 + 12049 0.66 0.867502
Target:  5'- cCCCUGCcgGUAUCUcuggGCCGCgCCgCCGAu -3'
miRNA:   3'- -GGGGCGa-CGUAGAag--UGGUG-GG-GGCU- -5'
10805 3' -58.9 NC_002794.1 + 61141 0.66 0.860263
Target:  5'- cCCCUGCUGC-----CGCCcgaCCCCGAg -3'
miRNA:   3'- -GGGGCGACGuagaaGUGGug-GGGGCU- -5'
10805 3' -58.9 NC_002794.1 + 31398 0.66 0.860263
Target:  5'- gCCCCGCcGCGcc--CGCCGCgCCCGc -3'
miRNA:   3'- -GGGGCGaCGUagaaGUGGUGgGGGCu -5'
10805 3' -58.9 NC_002794.1 + 113946 0.66 0.860263
Target:  5'- -gCCGCUGCcgggCUUCcugcaGCCACUCCUGc -3'
miRNA:   3'- ggGGCGACGua--GAAG-----UGGUGGGGGCu -5'
10805 3' -58.9 NC_002794.1 + 61808 0.66 0.860263
Target:  5'- uCCCCGCU-CAUCUccgGCgGCCgCCGGc -3'
miRNA:   3'- -GGGGCGAcGUAGAag-UGgUGGgGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.