miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10805 3' -58.9 NC_002794.1 + 73109 1.1 0.001864
Target:  5'- gCCCCGCUGCAUCUUCACCACCCCCGAg -3'
miRNA:   3'- -GGGGCGACGUAGAAGUGGUGGGGGCU- -5'
10805 3' -58.9 NC_002794.1 + 62145 0.8 0.198201
Target:  5'- aCCUCGacgcgcgcuuCUGCGUCUUCgagACCACCCCCGGc -3'
miRNA:   3'- -GGGGC----------GACGUAGAAG---UGGUGGGGGCU- -5'
10805 3' -58.9 NC_002794.1 + 58107 0.79 0.223074
Target:  5'- -aCCGCUGCGUCUUCcccACCgaGCCCCUGGg -3'
miRNA:   3'- ggGGCGACGUAGAAG---UGG--UGGGGGCU- -5'
10805 3' -58.9 NC_002794.1 + 84231 0.79 0.233745
Target:  5'- uCCCCGCcacCGUCUcccuccCACCGCCCCCGAc -3'
miRNA:   3'- -GGGGCGac-GUAGAa-----GUGGUGGGGGCU- -5'
10805 3' -58.9 NC_002794.1 + 193722 0.78 0.262303
Target:  5'- gCCCCGCcgGUGUCcUCGCCGCCCgCGGc -3'
miRNA:   3'- -GGGGCGa-CGUAGaAGUGGUGGGgGCU- -5'
10805 3' -58.9 NC_002794.1 + 193979 0.76 0.313796
Target:  5'- aCCgCCGCgGCcgCUacCGCCGCCCCCGGc -3'
miRNA:   3'- -GG-GGCGaCGuaGAa-GUGGUGGGGGCU- -5'
10805 3' -58.9 NC_002794.1 + 16585 0.76 0.349688
Target:  5'- aCCgCCGCcGcCGUCUccggcgUCGCCACCCCCGu -3'
miRNA:   3'- -GG-GGCGaC-GUAGA------AGUGGUGGGGGCu -5'
10805 3' -58.9 NC_002794.1 + 20665 0.76 0.349688
Target:  5'- gUCCUGCUGCucaacucgGUCUUCACCGuCCUCCGc -3'
miRNA:   3'- -GGGGCGACG--------UAGAAGUGGU-GGGGGCu -5'
10805 3' -58.9 NC_002794.1 + 191389 0.74 0.43843
Target:  5'- gCCCGCgGCcgCc-CACCACCCCCa- -3'
miRNA:   3'- gGGGCGaCGuaGaaGUGGUGGGGGcu -5'
10805 3' -58.9 NC_002794.1 + 13459 0.73 0.455907
Target:  5'- cCCCCGCUcGC-UCUggcCACCGCUCCCc- -3'
miRNA:   3'- -GGGGCGA-CGuAGAa--GUGGUGGGGGcu -5'
10805 3' -58.9 NC_002794.1 + 74008 0.73 0.501156
Target:  5'- cCCCaCGCUGCGcCUguucggccgcCACCccgGCCCCCGAg -3'
miRNA:   3'- -GGG-GCGACGUaGAa---------GUGG---UGGGGGCU- -5'
10805 3' -58.9 NC_002794.1 + 183014 0.72 0.538725
Target:  5'- gCCCCGC-GCG-CgccCGCCGCCCCgGAc -3'
miRNA:   3'- -GGGGCGaCGUaGaa-GUGGUGGGGgCU- -5'
10805 3' -58.9 NC_002794.1 + 195233 0.72 0.548273
Target:  5'- gCCCGCgcgGCGUCaccagCACCGaccaCCCCGGc -3'
miRNA:   3'- gGGGCGa--CGUAGaa---GUGGUg---GGGGCU- -5'
10805 3' -58.9 NC_002794.1 + 39814 0.71 0.557872
Target:  5'- uUUCGCccGCAUC-UCACC-CCCCCGAc -3'
miRNA:   3'- gGGGCGa-CGUAGaAGUGGuGGGGGCU- -5'
10805 3' -58.9 NC_002794.1 + 14206 0.71 0.567519
Target:  5'- gCCCGCUgGCcgCcccaaCGCCACCCgCCGAc -3'
miRNA:   3'- gGGGCGA-CGuaGaa---GUGGUGGG-GGCU- -5'
10805 3' -58.9 NC_002794.1 + 56546 0.71 0.567519
Target:  5'- aUCCGgaGCGcUCgcCGCCGCCCCCGc -3'
miRNA:   3'- gGGGCgaCGU-AGaaGUGGUGGGGGCu -5'
10805 3' -58.9 NC_002794.1 + 57336 0.71 0.577208
Target:  5'- gUCCUGCUGCAgcugcUCgaCGCCAgCUCCGAc -3'
miRNA:   3'- -GGGGCGACGU-----AGaaGUGGUgGGGGCU- -5'
10805 3' -58.9 NC_002794.1 + 35403 0.71 0.577208
Target:  5'- aCCCGCcuccGCGUCUcgACCGCCCUgGAc -3'
miRNA:   3'- gGGGCGa---CGUAGAagUGGUGGGGgCU- -5'
10805 3' -58.9 NC_002794.1 + 62768 0.71 0.586933
Target:  5'- cUCCgGCUGUuUCgccgcgCGCCGCCUCCGGg -3'
miRNA:   3'- -GGGgCGACGuAGaa----GUGGUGGGGGCU- -5'
10805 3' -58.9 NC_002794.1 + 23571 0.71 0.596688
Target:  5'- gCCCGgUGCcgC--CGCCACCCgCCGAu -3'
miRNA:   3'- gGGGCgACGuaGaaGUGGUGGG-GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.