miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10805 3' -58.9 NC_002794.1 + 68921 0.66 0.860263
Target:  5'- gCUCGCgGCGUCcUCGUCGCCCgCGGg -3'
miRNA:   3'- gGGGCGaCGUAGaAGUGGUGGGgGCU- -5'
10805 3' -58.9 NC_002794.1 + 63553 0.66 0.852834
Target:  5'- aCUCCGCUaccGCcaagacgUCACCuuccGCCCCCGGg -3'
miRNA:   3'- -GGGGCGA---CGuaga---AGUGG----UGGGGGCU- -5'
10805 3' -58.9 NC_002794.1 + 155580 0.66 0.852834
Target:  5'- uUCCGCUGCAUgaucaacagCUUCGCCuGgCCuuGAu -3'
miRNA:   3'- gGGGCGACGUA---------GAAGUGG-UgGGggCU- -5'
10805 3' -58.9 NC_002794.1 + 143114 0.66 0.852834
Target:  5'- gCCCCGCUcggccguggcGCAggUCUcggGCCACuCCCCGc -3'
miRNA:   3'- -GGGGCGA----------CGU--AGAag-UGGUG-GGGGCu -5'
10805 3' -58.9 NC_002794.1 + 134969 0.66 0.852834
Target:  5'- aCCC-CUGCuUCcaCGCCGCCuCCUGAc -3'
miRNA:   3'- gGGGcGACGuAGaaGUGGUGG-GGGCU- -5'
10805 3' -58.9 NC_002794.1 + 77176 0.66 0.845222
Target:  5'- aCCCGCUGUcggaaaggGUCcUCcuCCGCCgCCCGu -3'
miRNA:   3'- gGGGCGACG--------UAGaAGu-GGUGG-GGGCu -5'
10805 3' -58.9 NC_002794.1 + 41779 0.66 0.837432
Target:  5'- gCCCgGCcGCGUcCUUguCCA-CCCCGAa -3'
miRNA:   3'- -GGGgCGaCGUA-GAAguGGUgGGGGCU- -5'
10805 3' -58.9 NC_002794.1 + 46118 0.66 0.837432
Target:  5'- uCCCCGCccGCGUCg--GCU-CCCCCGu -3'
miRNA:   3'- -GGGGCGa-CGUAGaagUGGuGGGGGCu -5'
10805 3' -58.9 NC_002794.1 + 66915 0.66 0.837432
Target:  5'- cUCCgGCcGCcgAUCccccuccgcCACCGCCCCCGAg -3'
miRNA:   3'- -GGGgCGaCG--UAGaa-------GUGGUGGGGGCU- -5'
10805 3' -58.9 NC_002794.1 + 116999 0.67 0.832675
Target:  5'- gUCCGCgGCGUCUcgCccagguaccagccgcGCCACCCCgGGu -3'
miRNA:   3'- gGGGCGaCGUAGAa-G---------------UGGUGGGGgCU- -5'
10805 3' -58.9 NC_002794.1 + 136708 0.67 0.829471
Target:  5'- gCCCGgUGCAgg--CGCCGgUCCCGGc -3'
miRNA:   3'- gGGGCgACGUagaaGUGGUgGGGGCU- -5'
10805 3' -58.9 NC_002794.1 + 183795 0.67 0.829471
Target:  5'- cCCCCGUcacgauCAUCgaCACCACCaCCCa- -3'
miRNA:   3'- -GGGGCGac----GUAGaaGUGGUGG-GGGcu -5'
10805 3' -58.9 NC_002794.1 + 18952 0.67 0.829471
Target:  5'- aCCCGCgacucCUUCACCACCUcaUCGAc -3'
miRNA:   3'- gGGGCGacguaGAAGUGGUGGG--GGCU- -5'
10805 3' -58.9 NC_002794.1 + 187730 0.67 0.829471
Target:  5'- aCgCCGCUauacgGCAcCgUCGCCAUCUCCGAa -3'
miRNA:   3'- -GgGGCGA-----CGUaGaAGUGGUGGGGGCU- -5'
10805 3' -58.9 NC_002794.1 + 189862 0.67 0.829471
Target:  5'- -gCCGUcgGCGUCgUCGCCGCCgaCCGGc -3'
miRNA:   3'- ggGGCGa-CGUAGaAGUGGUGGg-GGCU- -5'
10805 3' -58.9 NC_002794.1 + 19653 0.67 0.828665
Target:  5'- uCCCCggcGCUGgGUCUUCucggaguuucuccGCUACCgCCCGc -3'
miRNA:   3'- -GGGG---CGACgUAGAAG-------------UGGUGG-GGGCu -5'
10805 3' -58.9 NC_002794.1 + 71023 0.67 0.821344
Target:  5'- -aCUGCUGC-UCgugCACCAggagcggcacguCCCCCGGa -3'
miRNA:   3'- ggGGCGACGuAGaa-GUGGU------------GGGGGCU- -5'
10805 3' -58.9 NC_002794.1 + 178006 0.67 0.820522
Target:  5'- uUCCGuCUGCAgcgcucgUCggggUCACCGCCCCg-- -3'
miRNA:   3'- gGGGC-GACGU-------AGa---AGUGGUGGGGgcu -5'
10805 3' -58.9 NC_002794.1 + 68697 0.67 0.818875
Target:  5'- aCCCCagucuccgcgaGCUGCucgccccaccccggGUCUUCGaacaCACCCCgGAg -3'
miRNA:   3'- -GGGG-----------CGACG--------------UAGAAGUg---GUGGGGgCU- -5'
10805 3' -58.9 NC_002794.1 + 152300 0.67 0.813059
Target:  5'- aCCCCgGCggGC-UCUcgCACUACCUCCGu -3'
miRNA:   3'- -GGGG-CGa-CGuAGAa-GUGGUGGGGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.