miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10805 3' -58.9 NC_002794.1 + 11392 0.66 0.867502
Target:  5'- aCCCaCGCcgGCua---CACCACCCCCc- -3'
miRNA:   3'- -GGG-GCGa-CGuagaaGUGGUGGGGGcu -5'
10805 3' -58.9 NC_002794.1 + 12049 0.66 0.867502
Target:  5'- cCCCUGCcgGUAUCUcuggGCCGCgCCgCCGAu -3'
miRNA:   3'- -GGGGCGa-CGUAGAag--UGGUG-GG-GGCU- -5'
10805 3' -58.9 NC_002794.1 + 13459 0.73 0.455907
Target:  5'- cCCCCGCUcGC-UCUggcCACCGCUCCCc- -3'
miRNA:   3'- -GGGGCGA-CGuAGAa--GUGGUGGGGGcu -5'
10805 3' -58.9 NC_002794.1 + 14163 0.67 0.787329
Target:  5'- gCCCCGCcGCcugaacCugCGCCUCCGAg -3'
miRNA:   3'- -GGGGCGaCGuagaa-GugGUGGGGGCU- -5'
10805 3' -58.9 NC_002794.1 + 14206 0.71 0.567519
Target:  5'- gCCCGCUgGCcgCcccaaCGCCACCCgCCGAc -3'
miRNA:   3'- gGGGCGA-CGuaGaa---GUGGUGGG-GGCU- -5'
10805 3' -58.9 NC_002794.1 + 15539 0.66 0.867502
Target:  5'- gUCUCGCcGCGUUUUCucucCCGCUCUCGGc -3'
miRNA:   3'- -GGGGCGaCGUAGAAGu---GGUGGGGGCU- -5'
10805 3' -58.9 NC_002794.1 + 16517 0.68 0.769521
Target:  5'- uCCCCG--GCGUCgcCACCGCcguCCCCGGc -3'
miRNA:   3'- -GGGGCgaCGUAGaaGUGGUG---GGGGCU- -5'
10805 3' -58.9 NC_002794.1 + 16585 0.76 0.349688
Target:  5'- aCCgCCGCcGcCGUCUccggcgUCGCCACCCCCGu -3'
miRNA:   3'- -GG-GGCGaC-GUAGA------AGUGGUGGGGGCu -5'
10805 3' -58.9 NC_002794.1 + 16626 0.69 0.723175
Target:  5'- cCCCCGCgccaccacCGUCgUCACCAccacucCCCCCGc -3'
miRNA:   3'- -GGGGCGac------GUAGaAGUGGU------GGGGGCu -5'
10805 3' -58.9 NC_002794.1 + 18952 0.67 0.829471
Target:  5'- aCCCGCgacucCUUCACCACCUcaUCGAc -3'
miRNA:   3'- gGGGCGacguaGAAGUGGUGGG--GGCU- -5'
10805 3' -58.9 NC_002794.1 + 19653 0.67 0.828665
Target:  5'- uCCCCggcGCUGgGUCUUCucggaguuucuccGCUACCgCCCGc -3'
miRNA:   3'- -GGGG---CGACgUAGAAG-------------UGGUGG-GGGCu -5'
10805 3' -58.9 NC_002794.1 + 20665 0.76 0.349688
Target:  5'- gUCCUGCUGCucaacucgGUCUUCACCGuCCUCCGc -3'
miRNA:   3'- -GGGGCGACG--------UAGAAGUGGU-GGGGGCu -5'
10805 3' -58.9 NC_002794.1 + 23571 0.71 0.596688
Target:  5'- gCCCGgUGCcgC--CGCCACCCgCCGAu -3'
miRNA:   3'- gGGGCgACGuaGaaGUGGUGGG-GGCU- -5'
10805 3' -58.9 NC_002794.1 + 23616 0.68 0.778485
Target:  5'- aCCCCGCggGCGccCggacgCGCgGCCCUCGAc -3'
miRNA:   3'- -GGGGCGa-CGUa-Gaa---GUGgUGGGGGCU- -5'
10805 3' -58.9 NC_002794.1 + 28708 0.7 0.645691
Target:  5'- -gCUGCUGcCGUCgUCGCCGCCgUCCGAc -3'
miRNA:   3'- ggGGCGAC-GUAGaAGUGGUGG-GGGCU- -5'
10805 3' -58.9 NC_002794.1 + 31398 0.66 0.860263
Target:  5'- gCCCCGCcGCGcc--CGCCGCgCCCGc -3'
miRNA:   3'- -GGGGCGaCGUagaaGUGGUGgGGGCu -5'
10805 3' -58.9 NC_002794.1 + 34809 0.67 0.813059
Target:  5'- gCCCGg-GCcgCgcgaCACCACCCCCu- -3'
miRNA:   3'- gGGGCgaCGuaGaa--GUGGUGGGGGcu -5'
10805 3' -58.9 NC_002794.1 + 35403 0.71 0.577208
Target:  5'- aCCCGCcuccGCGUCUcgACCGCCCUgGAc -3'
miRNA:   3'- gGGGCGa---CGUAGAagUGGUGGGGgCU- -5'
10805 3' -58.9 NC_002794.1 + 36562 0.68 0.751264
Target:  5'- gUCCGCUGCAga--CACgCGCCgCCGAg -3'
miRNA:   3'- gGGGCGACGUagaaGUG-GUGGgGGCU- -5'
10805 3' -58.9 NC_002794.1 + 39814 0.71 0.557872
Target:  5'- uUUCGCccGCAUC-UCACC-CCCCCGAc -3'
miRNA:   3'- gGGGCGa-CGUAGaAGUGGuGGGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.