miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10805 5' -53.5 NC_002794.1 + 95501 0.66 0.990095
Target:  5'- aGCUCGgccaguaucucuaugGCGAcCGCGUCGAagaccuCUUCACGc -3'
miRNA:   3'- -CGAGUa--------------CGCU-GUGCAGCU------GGAGUGCc -5'
10805 5' -53.5 NC_002794.1 + 126287 0.66 0.989969
Target:  5'- gGCUUgcuGUGCGcCGCG-CG-CCUgGCGGu -3'
miRNA:   3'- -CGAG---UACGCuGUGCaGCuGGAgUGCC- -5'
10805 5' -53.5 NC_002794.1 + 31071 0.66 0.989969
Target:  5'- aGCUCGcGCaGCACGUCGAgCgUgGCGa -3'
miRNA:   3'- -CGAGUaCGcUGUGCAGCU-GgAgUGCc -5'
10805 5' -53.5 NC_002794.1 + 107429 0.66 0.989969
Target:  5'- gGCUC-UGCGGCGCcUCGugCgugagcUCAuCGGa -3'
miRNA:   3'- -CGAGuACGCUGUGcAGCugG------AGU-GCC- -5'
10805 5' -53.5 NC_002794.1 + 68920 0.66 0.989969
Target:  5'- gGCUC--GCGGCGuccuCGUCG-CC-CGCGGg -3'
miRNA:   3'- -CGAGuaCGCUGU----GCAGCuGGaGUGCC- -5'
10805 5' -53.5 NC_002794.1 + 78424 0.66 0.989842
Target:  5'- cGCUCccgGCGuCACGgucgCGGCggacgcggacgcgCUCGCGGu -3'
miRNA:   3'- -CGAGua-CGCuGUGCa---GCUG-------------GAGUGCC- -5'
10805 5' -53.5 NC_002794.1 + 192435 0.66 0.988645
Target:  5'- cGCg---GcCGGCGCGUCGcgcGCCUCGCa- -3'
miRNA:   3'- -CGaguaC-GCUGUGCAGC---UGGAGUGcc -5'
10805 5' -53.5 NC_002794.1 + 120932 0.66 0.988645
Target:  5'- aGCUCuccGUGUuccGACucgaaaaguuuuACGUCGACCUCGgccCGGc -3'
miRNA:   3'- -CGAG---UACG---CUG------------UGCAGCUGGAGU---GCC- -5'
10805 5' -53.5 NC_002794.1 + 82049 0.66 0.988645
Target:  5'- gGCggCGgcgGCGGCGuCGuccUCGGCCUCGcCGGc -3'
miRNA:   3'- -CGa-GUa--CGCUGU-GC---AGCUGGAGU-GCC- -5'
10805 5' -53.5 NC_002794.1 + 91236 0.66 0.988645
Target:  5'- cGCg---GCGGC-CGUCGggcuGCgCUCGCGGa -3'
miRNA:   3'- -CGaguaCGCUGuGCAGC----UG-GAGUGCC- -5'
10805 5' -53.5 NC_002794.1 + 66746 0.66 0.988645
Target:  5'- gGCg---GCGGCGCGUaCGACCgCugGa -3'
miRNA:   3'- -CGaguaCGCUGUGCA-GCUGGaGugCc -5'
10805 5' -53.5 NC_002794.1 + 49006 0.66 0.988079
Target:  5'- aGCUCucccgcgccgcgGCGGCcgcgGCGUCGuCCggCGCGGu -3'
miRNA:   3'- -CGAGua----------CGCUG----UGCAGCuGGa-GUGCC- -5'
10805 5' -53.5 NC_002794.1 + 35152 0.66 0.987189
Target:  5'- aGCUCGUGuCGAC-CGagGAgcaCCgCGCGGa -3'
miRNA:   3'- -CGAGUAC-GCUGuGCagCU---GGaGUGCC- -5'
10805 5' -53.5 NC_002794.1 + 117669 0.66 0.987189
Target:  5'- cGCgcg-GCGGCGCGUacugcacguaGGCCUCGCa- -3'
miRNA:   3'- -CGaguaCGCUGUGCAg---------CUGGAGUGcc -5'
10805 5' -53.5 NC_002794.1 + 136475 0.66 0.987189
Target:  5'- gGUUCGccGCGuACAgGUCGAugcCUUCGCGGu -3'
miRNA:   3'- -CGAGUa-CGC-UGUgCAGCU---GGAGUGCC- -5'
10805 5' -53.5 NC_002794.1 + 138578 0.66 0.987189
Target:  5'- cGCUCGaucgaGGCGCGUCGGCgCg-GCGGa -3'
miRNA:   3'- -CGAGUacg--CUGUGCAGCUG-GagUGCC- -5'
10805 5' -53.5 NC_002794.1 + 105317 0.66 0.987189
Target:  5'- gGCUCAcgaucGCGcACACGuuacagcguuugUCGAUCUCcaGCGGg -3'
miRNA:   3'- -CGAGUa----CGC-UGUGC------------AGCUGGAG--UGCC- -5'
10805 5' -53.5 NC_002794.1 + 184784 0.66 0.986248
Target:  5'- cGCUCGU-CGACAcCGUCaACUccgggcucagcagcgUCACGGg -3'
miRNA:   3'- -CGAGUAcGCUGU-GCAGcUGG---------------AGUGCC- -5'
10805 5' -53.5 NC_002794.1 + 142489 0.66 0.985593
Target:  5'- --gCGUGCGGCGcCGgcagCGACgUgGCGGa -3'
miRNA:   3'- cgaGUACGCUGU-GCa---GCUGgAgUGCC- -5'
10805 5' -53.5 NC_002794.1 + 125078 0.66 0.985593
Target:  5'- aGUUCGUGCuGCugGgcuccagcgagcUCGAgUUCACGGc -3'
miRNA:   3'- -CGAGUACGcUGugC------------AGCUgGAGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.