miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10805 5' -53.5 NC_002794.1 + 73144 1.14 0.00422
Target:  5'- aGCUCAUGCGACACGUCGACCUCACGGa -3'
miRNA:   3'- -CGAGUACGCUGUGCAGCUGGAGUGCC- -5'
10805 5' -53.5 NC_002794.1 + 20860 0.77 0.574956
Target:  5'- cGCUCGUGCcacccguccccgcgaGuCACGUCGACCUCcuucguCGGg -3'
miRNA:   3'- -CGAGUACG---------------CuGUGCAGCUGGAGu-----GCC- -5'
10805 5' -53.5 NC_002794.1 + 141404 0.75 0.671118
Target:  5'- gGCUCG-GCGACgACGaUGACCUCGgGGg -3'
miRNA:   3'- -CGAGUaCGCUG-UGCaGCUGGAGUgCC- -5'
10805 5' -53.5 NC_002794.1 + 32806 0.74 0.739815
Target:  5'- cUUCGccGCGACcgucgucuuCGUCGGCCUCGCGGc -3'
miRNA:   3'- cGAGUa-CGCUGu--------GCAGCUGGAGUGCC- -5'
10805 5' -53.5 NC_002794.1 + 102457 0.74 0.768072
Target:  5'- cGCUCGaggagaUGCGGCGCGUCGGCgUgC-CGGc -3'
miRNA:   3'- -CGAGU------ACGCUGUGCAGCUGgA-GuGCC- -5'
10805 5' -53.5 NC_002794.1 + 54037 0.73 0.77727
Target:  5'- gGCgUCAgcUGCGACcCGUCGACgUgGCGGc -3'
miRNA:   3'- -CG-AGU--ACGCUGuGCAGCUGgAgUGCC- -5'
10805 5' -53.5 NC_002794.1 + 185760 0.73 0.79528
Target:  5'- aGCcgCcgGCGcggccgcccgucACACGUCGGCCggCGCGGg -3'
miRNA:   3'- -CGa-GuaCGC------------UGUGCAGCUGGa-GUGCC- -5'
10805 5' -53.5 NC_002794.1 + 150786 0.73 0.804077
Target:  5'- gGCUCGUGCGACucca-GGCCcCGCGGc -3'
miRNA:   3'- -CGAGUACGCUGugcagCUGGaGUGCC- -5'
10805 5' -53.5 NC_002794.1 + 45369 0.73 0.812723
Target:  5'- cGCaCGUGCGcgaGCcCGUCGGCCaCACGGg -3'
miRNA:   3'- -CGaGUACGC---UGuGCAGCUGGaGUGCC- -5'
10805 5' -53.5 NC_002794.1 + 118163 0.72 0.856496
Target:  5'- gGCUCAgggugucguaggcgGCGACGCGcCGACCUUcCGu -3'
miRNA:   3'- -CGAGUa-------------CGCUGUGCaGCUGGAGuGCc -5'
10805 5' -53.5 NC_002794.1 + 124811 0.71 0.868417
Target:  5'- --aCGUGCagGACACGUgCGACCUguCGGc -3'
miRNA:   3'- cgaGUACG--CUGUGCA-GCUGGAguGCC- -5'
10805 5' -53.5 NC_002794.1 + 141899 0.71 0.868417
Target:  5'- cGUcCAgGCGACGCGcCGuuCUCGCGGa -3'
miRNA:   3'- -CGaGUaCGCUGUGCaGCugGAGUGCC- -5'
10805 5' -53.5 NC_002794.1 + 108593 0.71 0.868417
Target:  5'- cGCUaucGCGGCGCGgcCGACCuggUCGCGGu -3'
miRNA:   3'- -CGAguaCGCUGUGCa-GCUGG---AGUGCC- -5'
10805 5' -53.5 NC_002794.1 + 138847 0.71 0.875603
Target:  5'- gGCUCucuggaaucGCGGgACucUCGGCCUCGCGGg -3'
miRNA:   3'- -CGAGua-------CGCUgUGc-AGCUGGAGUGCC- -5'
10805 5' -53.5 NC_002794.1 + 149269 0.71 0.895884
Target:  5'- cCUCGUccccgccgGCGGCGCGgCGGCUcgcUCACGGg -3'
miRNA:   3'- cGAGUA--------CGCUGUGCaGCUGG---AGUGCC- -5'
10805 5' -53.5 NC_002794.1 + 145391 0.7 0.908303
Target:  5'- cGCUCG-GUGGCGCGccgcgCGGCCUuaaagCGCGGc -3'
miRNA:   3'- -CGAGUaCGCUGUGCa----GCUGGA-----GUGCC- -5'
10805 5' -53.5 NC_002794.1 + 76833 0.7 0.914174
Target:  5'- aGCggCcgGCGauGCGCGcCGGCCUCGuCGGc -3'
miRNA:   3'- -CGa-GuaCGC--UGUGCaGCUGGAGU-GCC- -5'
10805 5' -53.5 NC_002794.1 + 47336 0.7 0.914174
Target:  5'- gGCUCccGCGGCGg--CGGCCUC-CGGa -3'
miRNA:   3'- -CGAGuaCGCUGUgcaGCUGGAGuGCC- -5'
10805 5' -53.5 NC_002794.1 + 138957 0.7 0.919815
Target:  5'- gGCgugC-UGCGACGCGgcggacgggUUGGCCUgGCGGg -3'
miRNA:   3'- -CGa--GuACGCUGUGC---------AGCUGGAgUGCC- -5'
10805 5' -53.5 NC_002794.1 + 107777 0.69 0.928877
Target:  5'- cGCUCGcccgGCGACgaccGCGUcCGcgcgcauugcgaacGCCUCGCGGu -3'
miRNA:   3'- -CGAGUa---CGCUG----UGCA-GC--------------UGGAGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.