miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10805 5' -53.5 NC_002794.1 + 82878 0.66 0.983849
Target:  5'- cGCgacCGUGCGcgccuCGCGUCcGCCUCGCc- -3'
miRNA:   3'- -CGa--GUACGCu----GUGCAGcUGGAGUGcc -5'
10805 5' -53.5 NC_002794.1 + 60465 0.66 0.983849
Target:  5'- cGCUCccGCGACugcaucCG-CGGCgaCACGGa -3'
miRNA:   3'- -CGAGuaCGCUGu-----GCaGCUGgaGUGCC- -5'
10805 5' -53.5 NC_002794.1 + 44297 0.66 0.983849
Target:  5'- cGCcgggCcgGCGAgGCGgggagCGACCgcgagCGCGGc -3'
miRNA:   3'- -CGa---GuaCGCUgUGCa----GCUGGa----GUGCC- -5'
10805 5' -53.5 NC_002794.1 + 155696 0.66 0.983849
Target:  5'- gGCUCGgugaucGCGuccaACACGUgGGCCUgCAuCGGg -3'
miRNA:   3'- -CGAGUa-----CGC----UGUGCAgCUGGA-GU-GCC- -5'
10805 5' -53.5 NC_002794.1 + 120437 0.67 0.98195
Target:  5'- aCUCAgccgGCGuggaacgcCGCGUCGGCCUggcucgauuucgCGCGGc -3'
miRNA:   3'- cGAGUa---CGCu-------GUGCAGCUGGA------------GUGCC- -5'
10805 5' -53.5 NC_002794.1 + 46239 0.67 0.98195
Target:  5'- cGCUCGccgGCGGCuCGUCcGCUUCcuCGGg -3'
miRNA:   3'- -CGAGUa--CGCUGuGCAGcUGGAGu-GCC- -5'
10805 5' -53.5 NC_002794.1 + 33634 0.67 0.98195
Target:  5'- -aUCGUGCGGCAC--CG-CCgCACGGg -3'
miRNA:   3'- cgAGUACGCUGUGcaGCuGGaGUGCC- -5'
10805 5' -53.5 NC_002794.1 + 117621 0.67 0.98195
Target:  5'- cGC-CGaGCGACaggGCGcCGACCgCGCGGc -3'
miRNA:   3'- -CGaGUaCGCUG---UGCaGCUGGaGUGCC- -5'
10805 5' -53.5 NC_002794.1 + 150628 0.67 0.980733
Target:  5'- aGCUCGUGaGccaguaucccggcacGCGCGUCGACCUgggcuggccCGCGa -3'
miRNA:   3'- -CGAGUACgC---------------UGUGCAGCUGGA---------GUGCc -5'
10805 5' -53.5 NC_002794.1 + 48595 0.67 0.979888
Target:  5'- -----aGCGGCgcgucgccgucgGCGUCGGCCUCagacGCGGa -3'
miRNA:   3'- cgaguaCGCUG------------UGCAGCUGGAG----UGCC- -5'
10805 5' -53.5 NC_002794.1 + 130013 0.67 0.977656
Target:  5'- -----aGCGuGCGgGUCGGCCUCGCGc -3'
miRNA:   3'- cgaguaCGC-UGUgCAGCUGGAGUGCc -5'
10805 5' -53.5 NC_002794.1 + 147777 0.67 0.977656
Target:  5'- -----aGCGACGCGgCGACC-CugGGc -3'
miRNA:   3'- cgaguaCGCUGUGCaGCUGGaGugCC- -5'
10805 5' -53.5 NC_002794.1 + 98957 0.67 0.977656
Target:  5'- gGCUCGUGCugGGCGcCGUCGgcggcgccgugGCCUCgguggucgGCGGc -3'
miRNA:   3'- -CGAGUACG--CUGU-GCAGC-----------UGGAG--------UGCC- -5'
10805 5' -53.5 NC_002794.1 + 195116 0.67 0.977656
Target:  5'- uCUCGUGCGcccgcgGCGCGcgCGGgCUCGCGu -3'
miRNA:   3'- cGAGUACGC------UGUGCa-GCUgGAGUGCc -5'
10805 5' -53.5 NC_002794.1 + 54377 0.67 0.975246
Target:  5'- --aCAUGCccugcaGACccGCGUCGacgcccGCCUCGCGGa -3'
miRNA:   3'- cgaGUACG------CUG--UGCAGC------UGGAGUGCC- -5'
10805 5' -53.5 NC_002794.1 + 146232 0.67 0.975246
Target:  5'- cCUCGgucGCGGCGucgucaucguCGUCGACCUCGuCGu -3'
miRNA:   3'- cGAGUa--CGCUGU----------GCAGCUGGAGU-GCc -5'
10805 5' -53.5 NC_002794.1 + 70891 0.67 0.975246
Target:  5'- cCUCGaGCGccaggucggugaGCACGUCGGCCagGCGa -3'
miRNA:   3'- cGAGUaCGC------------UGUGCAGCUGGagUGCc -5'
10805 5' -53.5 NC_002794.1 + 113879 0.67 0.972652
Target:  5'- cGCUCGgccGCGGCGCG-CGuCggCGCGGu -3'
miRNA:   3'- -CGAGUa--CGCUGUGCaGCuGgaGUGCC- -5'
10805 5' -53.5 NC_002794.1 + 79294 0.67 0.972652
Target:  5'- uUUCcUGCGugGCcgagcgccUCGAUCUCACGGc -3'
miRNA:   3'- cGAGuACGCugUGc-------AGCUGGAGUGCC- -5'
10805 5' -53.5 NC_002794.1 + 100059 0.67 0.972652
Target:  5'- gGCUCA-GCGACACGcUgGAgCUgGCGc -3'
miRNA:   3'- -CGAGUaCGCUGUGC-AgCUgGAgUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.