miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10805 5' -53.5 NC_002794.1 + 20860 0.77 0.574956
Target:  5'- cGCUCGUGCcacccguccccgcgaGuCACGUCGACCUCcuucguCGGg -3'
miRNA:   3'- -CGAGUACG---------------CuGUGCAGCUGGAGu-----GCC- -5'
10805 5' -53.5 NC_002794.1 + 21945 0.68 0.952881
Target:  5'- cGCUCGUcgaaGGC-CGUCGGCCgcuccCGCGGc -3'
miRNA:   3'- -CGAGUAcg--CUGuGCAGCUGGa----GUGCC- -5'
10805 5' -53.5 NC_002794.1 + 31071 0.66 0.989969
Target:  5'- aGCUCGcGCaGCACGUCGAgCgUgGCGa -3'
miRNA:   3'- -CGAGUaCGcUGUGCAGCU-GgAgUGCc -5'
10805 5' -53.5 NC_002794.1 + 32806 0.74 0.739815
Target:  5'- cUUCGccGCGACcgucgucuuCGUCGGCCUCGCGGc -3'
miRNA:   3'- cGAGUa-CGCUGu--------GCAGCUGGAGUGCC- -5'
10805 5' -53.5 NC_002794.1 + 33634 0.67 0.98195
Target:  5'- -aUCGUGCGGCAC--CG-CCgCACGGg -3'
miRNA:   3'- cgAGUACGCUGUGcaGCuGGaGUGCC- -5'
10805 5' -53.5 NC_002794.1 + 35152 0.66 0.987189
Target:  5'- aGCUCGUGuCGAC-CGagGAgcaCCgCGCGGa -3'
miRNA:   3'- -CGAGUAC-GCUGuGCagCU---GGaGUGCC- -5'
10805 5' -53.5 NC_002794.1 + 42042 0.67 0.972652
Target:  5'- uGUUCAUGCGgaGCGCGUgccagaugauguUGGCCgacuggcCGCGGg -3'
miRNA:   3'- -CGAGUACGC--UGUGCA------------GCUGGa------GUGCC- -5'
10805 5' -53.5 NC_002794.1 + 44297 0.66 0.983849
Target:  5'- cGCcgggCcgGCGAgGCGgggagCGACCgcgagCGCGGc -3'
miRNA:   3'- -CGa---GuaCGCUgUGCa----GCUGGa----GUGCC- -5'
10805 5' -53.5 NC_002794.1 + 45369 0.73 0.812723
Target:  5'- cGCaCGUGCGcgaGCcCGUCGGCCaCACGGg -3'
miRNA:   3'- -CGaGUACGC---UGuGCAGCUGGaGUGCC- -5'
10805 5' -53.5 NC_002794.1 + 46239 0.67 0.98195
Target:  5'- cGCUCGccgGCGGCuCGUCcGCUUCcuCGGg -3'
miRNA:   3'- -CGAGUa--CGCUGuGCAGcUGGAGu-GCC- -5'
10805 5' -53.5 NC_002794.1 + 47336 0.7 0.914174
Target:  5'- gGCUCccGCGGCGg--CGGCCUC-CGGa -3'
miRNA:   3'- -CGAGuaCGCUGUgcaGCUGGAGuGCC- -5'
10805 5' -53.5 NC_002794.1 + 48595 0.67 0.979888
Target:  5'- -----aGCGGCgcgucgccgucgGCGUCGGCCUCagacGCGGa -3'
miRNA:   3'- cgaguaCGCUG------------UGCAGCUGGAG----UGCC- -5'
10805 5' -53.5 NC_002794.1 + 49006 0.66 0.988079
Target:  5'- aGCUCucccgcgccgcgGCGGCcgcgGCGUCGuCCggCGCGGu -3'
miRNA:   3'- -CGAGua----------CGCUG----UGCAGCuGGa-GUGCC- -5'
10805 5' -53.5 NC_002794.1 + 54037 0.73 0.77727
Target:  5'- gGCgUCAgcUGCGACcCGUCGACgUgGCGGc -3'
miRNA:   3'- -CG-AGU--ACGCUGuGCAGCUGgAgUGCC- -5'
10805 5' -53.5 NC_002794.1 + 54377 0.67 0.975246
Target:  5'- --aCAUGCccugcaGACccGCGUCGacgcccGCCUCGCGGa -3'
miRNA:   3'- cgaGUACG------CUG--UGCAGC------UGGAGUGCC- -5'
10805 5' -53.5 NC_002794.1 + 57766 0.69 0.935358
Target:  5'- cGCUCGaGCaGAC-CGUCGAgCUCACc- -3'
miRNA:   3'- -CGAGUaCG-CUGuGCAGCUgGAGUGcc -5'
10805 5' -53.5 NC_002794.1 + 60465 0.66 0.983849
Target:  5'- cGCUCccGCGACugcaucCG-CGGCgaCACGGa -3'
miRNA:   3'- -CGAGuaCGCUGu-----GCaGCUGgaGUGCC- -5'
10805 5' -53.5 NC_002794.1 + 61617 0.68 0.969867
Target:  5'- cGCUUucuucgucaugGUGCGACAguugGUCGACgucgUCACGGa -3'
miRNA:   3'- -CGAG-----------UACGCUGUg---CAGCUGg---AGUGCC- -5'
10805 5' -53.5 NC_002794.1 + 63194 0.68 0.956703
Target:  5'- cGCUCcUGggucUGAC-CGUCGACCUgCGCGa -3'
miRNA:   3'- -CGAGuAC----GCUGuGCAGCUGGA-GUGCc -5'
10805 5' -53.5 NC_002794.1 + 66746 0.66 0.988645
Target:  5'- gGCg---GCGGCGCGUaCGACCgCugGa -3'
miRNA:   3'- -CGaguaCGCUGUGCA-GCUGGaGugCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.