miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10806 3' -57.5 NC_002794.1 + 34237 0.66 0.914284
Target:  5'- -aGGagcUGCACGCGCggcugCCGCcGCaGGCg -3'
miRNA:   3'- ggCC---AUGUGCGCGaa---GGUGaCG-CCGa -5'
10806 3' -57.5 NC_002794.1 + 40318 0.66 0.914284
Target:  5'- aCGGUuuuccucacccGC-CGCGCggacgcgCCACcgGCGGCg -3'
miRNA:   3'- gGCCA-----------UGuGCGCGaa-----GGUGa-CGCCGa -5'
10806 3' -57.5 NC_002794.1 + 261 0.66 0.914284
Target:  5'- gCCGccGCGCGCGCggaCGCgaggacgGCGGCc -3'
miRNA:   3'- -GGCcaUGUGCGCGaagGUGa------CGCCGa -5'
10806 3' -57.5 NC_002794.1 + 95752 0.66 0.914284
Target:  5'- gCUGGUACuCGCggggcgGCggCCGCgacgGCGGCc -3'
miRNA:   3'- -GGCCAUGuGCG------CGaaGGUGa---CGCCGa -5'
10806 3' -57.5 NC_002794.1 + 100792 0.66 0.911994
Target:  5'- gCGGUuCGCGgcCGCUUCUGCgccuacgugccggGCGGCg -3'
miRNA:   3'- gGCCAuGUGC--GCGAAGGUGa------------CGCCGa -5'
10806 3' -57.5 NC_002794.1 + 81234 0.66 0.908493
Target:  5'- cCCGGgcCGCGCGCgcaCCACggacGaCGcGCUg -3'
miRNA:   3'- -GGCCauGUGCGCGaa-GGUGa---C-GC-CGA- -5'
10806 3' -57.5 NC_002794.1 + 148124 0.66 0.908493
Target:  5'- gUCGGUGuCGgGCGCggggCCGCcGgGGCg -3'
miRNA:   3'- -GGCCAU-GUgCGCGaa--GGUGaCgCCGa -5'
10806 3' -57.5 NC_002794.1 + 94803 0.66 0.908493
Target:  5'- aCGGggaugGCA-GCGCUaCUaccggcggguGCUGCGGCUg -3'
miRNA:   3'- gGCCa----UGUgCGCGAaGG----------UGACGCCGA- -5'
10806 3' -57.5 NC_002794.1 + 111641 0.66 0.908493
Target:  5'- gCCGGU-CGgGCGCcgCgGCcGCGGCc -3'
miRNA:   3'- -GGCCAuGUgCGCGaaGgUGaCGCCGa -5'
10806 3' -57.5 NC_002794.1 + 121486 0.66 0.908493
Target:  5'- gCCGGUucggACGCG-GCcUCCGCcGgGGCg -3'
miRNA:   3'- -GGCCA----UGUGCgCGaAGGUGaCgCCGa -5'
10806 3' -57.5 NC_002794.1 + 122599 0.66 0.908493
Target:  5'- aCGG-GCugGCGCUgagccugaacgUCaCGC-GCGGCUa -3'
miRNA:   3'- gGCCaUGugCGCGA-----------AG-GUGaCGCCGA- -5'
10806 3' -57.5 NC_002794.1 + 96179 0.66 0.907308
Target:  5'- cCUGGUGCACcgGCGCcugccggccgagUCC-CUGcCGGCg -3'
miRNA:   3'- -GGCCAUGUG--CGCGa-----------AGGuGAC-GCCGa -5'
10806 3' -57.5 NC_002794.1 + 116726 0.66 0.902481
Target:  5'- cUCGGUGCcgaGCGUGUUggcgacgCCGCcgaggaagGCGGCUg -3'
miRNA:   3'- -GGCCAUG---UGCGCGAa------GGUGa-------CGCCGA- -5'
10806 3' -57.5 NC_002794.1 + 70660 0.66 0.902481
Target:  5'- gCCucGUGCGCG-GCggCCGCcGCGGCg -3'
miRNA:   3'- -GGc-CAUGUGCgCGaaGGUGaCGCCGa -5'
10806 3' -57.5 NC_002794.1 + 143559 0.66 0.902481
Target:  5'- aCGGUGgcccagccgUGCGCGCcgUCCucgGCGGCg -3'
miRNA:   3'- gGCCAU---------GUGCGCGa-AGGugaCGCCGa -5'
10806 3' -57.5 NC_002794.1 + 185551 0.66 0.902481
Target:  5'- cCCGGc-CGCGCGCcccgCCcuGCcGCGGCa -3'
miRNA:   3'- -GGCCauGUGCGCGaa--GG--UGaCGCCGa -5'
10806 3' -57.5 NC_002794.1 + 104464 0.66 0.89625
Target:  5'- cCCGGgcgGCgugugcaggauGCGgGCggCCACgGCGGCc -3'
miRNA:   3'- -GGCCa--UG-----------UGCgCGaaGGUGaCGCCGa -5'
10806 3' -57.5 NC_002794.1 + 56896 0.66 0.89625
Target:  5'- uCCaGGUGcCGCGCGUggCCACggGCgccgGGCUg -3'
miRNA:   3'- -GG-CCAU-GUGCGCGaaGGUGa-CG----CCGA- -5'
10806 3' -57.5 NC_002794.1 + 88960 0.66 0.89625
Target:  5'- cUCGGUACGaGCGUggCCGCcggaucgucGCGGCa -3'
miRNA:   3'- -GGCCAUGUgCGCGaaGGUGa--------CGCCGa -5'
10806 3' -57.5 NC_002794.1 + 106956 0.66 0.89625
Target:  5'- cCUGGagACACGCGUcgCCucGCgcgGCGGCc -3'
miRNA:   3'- -GGCCa-UGUGCGCGaaGG--UGa--CGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.