miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10806 3' -57.5 NC_002794.1 + 71578 1.09 0.002742
Target:  5'- uCCGGUACACGCGCUUCCACUGCGGCUg -3'
miRNA:   3'- -GGCCAUGUGCGCGAAGGUGACGCCGA- -5'
10806 3' -57.5 NC_002794.1 + 151582 0.75 0.453568
Target:  5'- cCCGGcgGCGCGCGCcgCCGCcGCGGg- -3'
miRNA:   3'- -GGCCa-UGUGCGCGaaGGUGaCGCCga -5'
10806 3' -57.5 NC_002794.1 + 183178 0.73 0.556505
Target:  5'- gCCGGUcggggaccgAgACGCGCcgCCACgccgGCGGCg -3'
miRNA:   3'- -GGCCA---------UgUGCGCGaaGGUGa---CGCCGa -5'
10806 3' -57.5 NC_002794.1 + 120248 0.73 0.556505
Target:  5'- gCCGuGUACACGCGCUUCUuCgUGCaggagGGCUu -3'
miRNA:   3'- -GGC-CAUGUGCGCGAAGGuG-ACG-----CCGA- -5'
10806 3' -57.5 NC_002794.1 + 57493 0.73 0.566254
Target:  5'- aCCaGGUGCGCGCGCccgCCGCcuaCGGCg -3'
miRNA:   3'- -GG-CCAUGUGCGCGaa-GGUGac-GCCGa -5'
10806 3' -57.5 NC_002794.1 + 184558 0.73 0.566254
Target:  5'- uUCGGacgccuCACGCGCcgCCGCgGCGGCg -3'
miRNA:   3'- -GGCCau----GUGCGCGaaGGUGaCGCCGa -5'
10806 3' -57.5 NC_002794.1 + 86950 0.73 0.566254
Target:  5'- uCCGGcgaGCGuCGacgUCCGCUGCGGCg -3'
miRNA:   3'- -GGCCaugUGC-GCga-AGGUGACGCCGa -5'
10806 3' -57.5 NC_002794.1 + 107393 0.71 0.635365
Target:  5'- gUCGG-GCugGCGCUgaUCCucgGCGGCUa -3'
miRNA:   3'- -GGCCaUGugCGCGA--AGGugaCGCCGA- -5'
10806 3' -57.5 NC_002794.1 + 136709 0.71 0.635365
Target:  5'- cCCGGUGCAgGCGCcggUCCcgGCguccagGCGGUc -3'
miRNA:   3'- -GGCCAUGUgCGCGa--AGG--UGa-----CGCCGa -5'
10806 3' -57.5 NC_002794.1 + 140496 0.71 0.645284
Target:  5'- aCCGGgcgcugUAC-CGCGaCUUCCACcgcugGCGGCa -3'
miRNA:   3'- -GGCC------AUGuGCGC-GAAGGUGa----CGCCGa -5'
10806 3' -57.5 NC_002794.1 + 100072 0.71 0.663108
Target:  5'- gCUGGaGCugGCGCccgucuuccacgUCCGCgUGCGGCg -3'
miRNA:   3'- -GGCCaUGugCGCGa-----------AGGUG-ACGCCGa -5'
10806 3' -57.5 NC_002794.1 + 157513 0.71 0.665084
Target:  5'- aCCGGcGgACGCGCUggggaUCCAguugGCGGCUu -3'
miRNA:   3'- -GGCCaUgUGCGCGA-----AGGUga--CGCCGA- -5'
10806 3' -57.5 NC_002794.1 + 83625 0.7 0.694578
Target:  5'- aCGGgcgcccucCACGC-CUaCCGCUGCGGCg -3'
miRNA:   3'- gGCCau------GUGCGcGAaGGUGACGCCGa -5'
10806 3' -57.5 NC_002794.1 + 108815 0.7 0.714009
Target:  5'- -aGGUGCAa-CGCUUCgGCgucgGCGGCUu -3'
miRNA:   3'- ggCCAUGUgcGCGAAGgUGa---CGCCGA- -5'
10806 3' -57.5 NC_002794.1 + 82795 0.7 0.714009
Target:  5'- gCCGcGUcCACGCGCg-CCGCgacccGCGGCUc -3'
miRNA:   3'- -GGC-CAuGUGCGCGaaGGUGa----CGCCGA- -5'
10806 3' -57.5 NC_002794.1 + 184503 0.7 0.714009
Target:  5'- cCCGGgcgGCGCGgGCc-CCGCgcGCGGCg -3'
miRNA:   3'- -GGCCa--UGUGCgCGaaGGUGa-CGCCGa -5'
10806 3' -57.5 NC_002794.1 + 138197 0.7 0.72363
Target:  5'- gCCGGUcCACGUccacgGCUUCCGuCccGCGGCg -3'
miRNA:   3'- -GGCCAuGUGCG-----CGAAGGU-Ga-CGCCGa -5'
10806 3' -57.5 NC_002794.1 + 43260 0.7 0.72363
Target:  5'- gCCGGgugguaGCACuCGCagaUCCGCUGCcGGCUg -3'
miRNA:   3'- -GGCCa-----UGUGcGCGa--AGGUGACG-CCGA- -5'
10806 3' -57.5 NC_002794.1 + 58672 0.7 0.733177
Target:  5'- gCCGGccgUGCACGCGCacuaccgCCAgCUGCucgGGCUg -3'
miRNA:   3'- -GGCC---AUGUGCGCGaa-----GGU-GACG---CCGA- -5'
10806 3' -57.5 NC_002794.1 + 112518 0.69 0.752016
Target:  5'- gCGGUGCugGCGCaggaggUCCAagaaguaGCGGUa -3'
miRNA:   3'- gGCCAUGugCGCGa-----AGGUga-----CGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.