miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10806 3' -57.5 NC_002794.1 + 56896 0.66 0.89625
Target:  5'- uCCaGGUGcCGCGCGUggCCACggGCgccgGGCUg -3'
miRNA:   3'- -GG-CCAU-GUGCGCGaaGGUGa-CG----CCGA- -5'
10806 3' -57.5 NC_002794.1 + 104464 0.66 0.89625
Target:  5'- cCCGGgcgGCgugugcaggauGCGgGCggCCACgGCGGCc -3'
miRNA:   3'- -GGCCa--UG-----------UGCgCGaaGGUGaCGCCGa -5'
10806 3' -57.5 NC_002794.1 + 133269 0.66 0.89625
Target:  5'- aCCGGgagACuCGCGUgUgCGC-GCGGCUa -3'
miRNA:   3'- -GGCCa--UGuGCGCGaAgGUGaCGCCGA- -5'
10806 3' -57.5 NC_002794.1 + 125049 0.66 0.892407
Target:  5'- cCUGGUGCACGCGaacccgCCgaccaucaaguucguGCUGCugGGCUc -3'
miRNA:   3'- -GGCCAUGUGCGCgaa---GG---------------UGACG--CCGA- -5'
10806 3' -57.5 NC_002794.1 + 123536 0.66 0.889802
Target:  5'- uUCGGgcACACGCGCUacagCCGCg--GGCUg -3'
miRNA:   3'- -GGCCa-UGUGCGCGAa---GGUGacgCCGA- -5'
10806 3' -57.5 NC_002794.1 + 20436 0.66 0.889802
Target:  5'- gCCGGaggacgUGCAC-CGCUggagCCGCcucUGCGGCc -3'
miRNA:   3'- -GGCC------AUGUGcGCGAa---GGUG---ACGCCGa -5'
10806 3' -57.5 NC_002794.1 + 60451 0.66 0.889802
Target:  5'- aCGaGUACcucACGCGCUcCCGCgacugcauccGCGGCg -3'
miRNA:   3'- gGC-CAUG---UGCGCGAaGGUGa---------CGCCGa -5'
10806 3' -57.5 NC_002794.1 + 109361 0.66 0.889802
Target:  5'- gCGGauccGCACGCGUUuaagcucgaUCUGCUGCGGa- -3'
miRNA:   3'- gGCCa---UGUGCGCGA---------AGGUGACGCCga -5'
10806 3' -57.5 NC_002794.1 + 184064 0.66 0.883141
Target:  5'- gCGGcgaagcgGCACGCGC--CCACgguguaGCGGCa -3'
miRNA:   3'- gGCCa------UGUGCGCGaaGGUGa-----CGCCGa -5'
10806 3' -57.5 NC_002794.1 + 92033 0.67 0.876272
Target:  5'- cCUGGUGCACuGCGCcgugaaCCugUGUccGGCg -3'
miRNA:   3'- -GGCCAUGUG-CGCGaa----GGugACG--CCGa -5'
10806 3' -57.5 NC_002794.1 + 136399 0.67 0.874873
Target:  5'- uCCGGgucGCGCGUGCgcugaacggcggUCCAUaaccggagcgGCGGCUg -3'
miRNA:   3'- -GGCCa--UGUGCGCGa-----------AGGUGa---------CGCCGA- -5'
10806 3' -57.5 NC_002794.1 + 148202 0.67 0.869197
Target:  5'- uCCGGcgccgGCGCGCGCUcgaucggucUCCGgU-CGGCg -3'
miRNA:   3'- -GGCCa----UGUGCGCGA---------AGGUgAcGCCGa -5'
10806 3' -57.5 NC_002794.1 + 192745 0.67 0.869197
Target:  5'- gCCGGUACAccuCGCGCUccUCCACgccGaaGCc -3'
miRNA:   3'- -GGCCAUGU---GCGCGA--AGGUGa--CgcCGa -5'
10806 3' -57.5 NC_002794.1 + 72449 0.67 0.869197
Target:  5'- aCCGGcgGCGCcccGCGCccggccCCGCgGCGGCg -3'
miRNA:   3'- -GGCCa-UGUG---CGCGaa----GGUGaCGCCGa -5'
10806 3' -57.5 NC_002794.1 + 56297 0.67 0.869197
Target:  5'- aCGaUGCGCGCGCggUCGCggucgcugGCGGCc -3'
miRNA:   3'- gGCcAUGUGCGCGaaGGUGa-------CGCCGa -5'
10806 3' -57.5 NC_002794.1 + 127578 0.67 0.861922
Target:  5'- aCCGuGgGCACG-GCUUUCACUcugcGCGGCc -3'
miRNA:   3'- -GGC-CaUGUGCgCGAAGGUGA----CGCCGa -5'
10806 3' -57.5 NC_002794.1 + 122924 0.67 0.857463
Target:  5'- aCGGUGUACGUGCagaaggagcggaaCCGgUGCGGCUg -3'
miRNA:   3'- gGCCAUGUGCGCGaa-----------GGUgACGCCGA- -5'
10806 3' -57.5 NC_002794.1 + 186306 0.67 0.857463
Target:  5'- gCCGGUcgccGCgGCGCGCUcguccuccaacacgaUCgACgGCGGCg -3'
miRNA:   3'- -GGCCA----UG-UGCGCGA---------------AGgUGaCGCCGa -5'
10806 3' -57.5 NC_002794.1 + 114492 0.67 0.854452
Target:  5'- cCCGGUcCACGCGCgccggaccgUCCcggaGCgagucgaGCGGCa -3'
miRNA:   3'- -GGCCAuGUGCGCGa--------AGG----UGa------CGCCGa -5'
10806 3' -57.5 NC_002794.1 + 71770 0.67 0.854452
Target:  5'- aCCGGU-C-CGCGCcgUCGC-GCGGCg -3'
miRNA:   3'- -GGCCAuGuGCGCGaaGGUGaCGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.