miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10806 3' -57.5 NC_002794.1 + 261 0.66 0.914284
Target:  5'- gCCGccGCGCGCGCggaCGCgaggacgGCGGCc -3'
miRNA:   3'- -GGCcaUGUGCGCGaagGUGa------CGCCGa -5'
10806 3' -57.5 NC_002794.1 + 855 0.66 0.89625
Target:  5'- uUCGGcccaGCGCGCGC--CCGCgagGCGGUc -3'
miRNA:   3'- -GGCCa---UGUGCGCGaaGGUGa--CGCCGa -5'
10806 3' -57.5 NC_002794.1 + 14473 0.68 0.797232
Target:  5'- gCGGcGCGCcGCGCUcgcugUUCGCgGCGGCg -3'
miRNA:   3'- gGCCaUGUG-CGCGA-----AGGUGaCGCCGa -5'
10806 3' -57.5 NC_002794.1 + 19948 0.68 0.814393
Target:  5'- aCGGaagACguGCGgGCUUCgaGCUGCGGCc -3'
miRNA:   3'- gGCCa--UG--UGCgCGAAGg-UGACGCCGa -5'
10806 3' -57.5 NC_002794.1 + 20436 0.66 0.889802
Target:  5'- gCCGGaggacgUGCAC-CGCUggagCCGCcucUGCGGCc -3'
miRNA:   3'- -GGCC------AUGUGcGCGAa---GGUG---ACGCCGa -5'
10806 3' -57.5 NC_002794.1 + 22872 0.68 0.794607
Target:  5'- cCCGGccguCGCGCGCUUCCcuggcCUcccguugguggacgGCGGCg -3'
miRNA:   3'- -GGCCau--GUGCGCGAAGGu----GA--------------CGCCGa -5'
10806 3' -57.5 NC_002794.1 + 33465 0.69 0.788436
Target:  5'- gCCGG-ACGCGCcCacgCCGCUGCaGCUg -3'
miRNA:   3'- -GGCCaUGUGCGcGaa-GGUGACGcCGA- -5'
10806 3' -57.5 NC_002794.1 + 34237 0.66 0.914284
Target:  5'- -aGGagcUGCACGCGCggcugCCGCcGCaGGCg -3'
miRNA:   3'- ggCC---AUGUGCGCGaa---GGUGaCG-CCGa -5'
10806 3' -57.5 NC_002794.1 + 38404 0.68 0.838158
Target:  5'- cCCGGUcacccgGCGaGCGCUcgccgacUCCAUgGCGGCg -3'
miRNA:   3'- -GGCCA------UGUgCGCGA-------AGGUGaCGCCGa -5'
10806 3' -57.5 NC_002794.1 + 38613 0.69 0.768633
Target:  5'- gCCGG-ACGgGCGCgucccgacucgCCGgUGCGGCg -3'
miRNA:   3'- -GGCCaUGUgCGCGaa---------GGUgACGCCGa -5'
10806 3' -57.5 NC_002794.1 + 40318 0.66 0.914284
Target:  5'- aCGGUuuuccucacccGC-CGCGCggacgcgCCACcgGCGGCg -3'
miRNA:   3'- gGCCA-----------UGuGCGCGaa-----GGUGa-CGCCGa -5'
10806 3' -57.5 NC_002794.1 + 43260 0.7 0.72363
Target:  5'- gCCGGgugguaGCACuCGCagaUCCGCUGCcGGCUg -3'
miRNA:   3'- -GGCCa-----UGUGcGCGa--AGGUGACG-CCGA- -5'
10806 3' -57.5 NC_002794.1 + 47328 0.66 0.89625
Target:  5'- -gGGUGCcCG-GCUcCCGCgGCGGCg -3'
miRNA:   3'- ggCCAUGuGCgCGAaGGUGaCGCCGa -5'
10806 3' -57.5 NC_002794.1 + 56175 0.69 0.770458
Target:  5'- cCCGGUGCACGUagaGCaccgggCCGCgGCaGGCg -3'
miRNA:   3'- -GGCCAUGUGCG---CGaa----GGUGaCG-CCGa -5'
10806 3' -57.5 NC_002794.1 + 56297 0.67 0.869197
Target:  5'- aCGaUGCGCGCGCggUCGCggucgcugGCGGCc -3'
miRNA:   3'- gGCcAUGUGCGCGaaGGUGa-------CGCCGa -5'
10806 3' -57.5 NC_002794.1 + 56896 0.66 0.89625
Target:  5'- uCCaGGUGcCGCGCGUggCCACggGCgccgGGCUg -3'
miRNA:   3'- -GG-CCAU-GUGCGCGaaGGUGa-CG----CCGA- -5'
10806 3' -57.5 NC_002794.1 + 57493 0.73 0.566254
Target:  5'- aCCaGGUGCGCGCGCccgCCGCcuaCGGCg -3'
miRNA:   3'- -GG-CCAUGUGCGCGaa-GGUGac-GCCGa -5'
10806 3' -57.5 NC_002794.1 + 58090 0.69 0.770458
Target:  5'- cCCGGcGCcCGCGCUcgaCCGCUGCGuCUu -3'
miRNA:   3'- -GGCCaUGuGCGCGAa--GGUGACGCcGA- -5'
10806 3' -57.5 NC_002794.1 + 58547 0.68 0.814393
Target:  5'- gCGGcGCGCGCGCUgcuggCgCGCUGCG-Cg -3'
miRNA:   3'- gGCCaUGUGCGCGAa----G-GUGACGCcGa -5'
10806 3' -57.5 NC_002794.1 + 58672 0.7 0.733177
Target:  5'- gCCGGccgUGCACGCGCacuaccgCCAgCUGCucgGGCUg -3'
miRNA:   3'- -GGCC---AUGUGCGCGaa-----GGU-GACG---CCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.