miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10806 5' -55.7 NC_002794.1 + 68314 0.66 0.95299
Target:  5'- gGCGGCCGaCgcguuccgcGGCCUGGUG--ACCGGg -3'
miRNA:   3'- -CGUCGGC-Gaa-------CUGGGCCAUcaUGGUC- -5'
10806 5' -55.7 NC_002794.1 + 182665 0.66 0.95299
Target:  5'- aCAGCCGauagagGACCCGGUcc--CCGGa -3'
miRNA:   3'- cGUCGGCgaa---CUGGGCCAucauGGUC- -5'
10806 5' -55.7 NC_002794.1 + 129279 0.66 0.948936
Target:  5'- aGCgGGCCGgUcu-CUCGGUGGUACCGc -3'
miRNA:   3'- -CG-UCGGCgAacuGGGCCAUCAUGGUc -5'
10806 5' -55.7 NC_002794.1 + 12020 0.66 0.947675
Target:  5'- uGC-GCCGCc-GGCCCGGgcGUccgcgccuuccccuGCCGGu -3'
miRNA:   3'- -CGuCGGCGaaCUGGGCCauCA--------------UGGUC- -5'
10806 5' -55.7 NC_002794.1 + 134681 0.66 0.944656
Target:  5'- cGCGGCCGCgcuUGGCUCGaccgccucUGGggGCCGGa -3'
miRNA:   3'- -CGUCGGCGa--ACUGGGCc-------AUCa-UGGUC- -5'
10806 5' -55.7 NC_002794.1 + 113394 0.66 0.944656
Target:  5'- uGCAGgCGCUgcaGcACCCGGagcUGGU-CCAGc -3'
miRNA:   3'- -CGUCgGCGAa--C-UGGGCC---AUCAuGGUC- -5'
10806 5' -55.7 NC_002794.1 + 180684 0.66 0.940148
Target:  5'- cCGGCCGCUcccgGcGCCCGGcGGgcggACCAu -3'
miRNA:   3'- cGUCGGCGAa---C-UGGGCCaUCa---UGGUc -5'
10806 5' -55.7 NC_002794.1 + 13862 0.66 0.940148
Target:  5'- cGCcGCCGCcgcGACCCGGUucuccgAGcGCCGc -3'
miRNA:   3'- -CGuCGGCGaa-CUGGGCCA------UCaUGGUc -5'
10806 5' -55.7 NC_002794.1 + 127602 0.66 0.940148
Target:  5'- cGCGGCCGCUgagcGGCgCGG----ACCGGa -3'
miRNA:   3'- -CGUCGGCGAa---CUGgGCCaucaUGGUC- -5'
10806 5' -55.7 NC_002794.1 + 12728 0.66 0.940148
Target:  5'- cGCGGCgaCGag-GGCCCGGUccgcUACCAGg -3'
miRNA:   3'- -CGUCG--GCgaaCUGGGCCAuc--AUGGUC- -5'
10806 5' -55.7 NC_002794.1 + 13986 0.66 0.93875
Target:  5'- uGCGGCCGCUauGCCCguuacaacgugcacGGUcggcaAGUGCUGGu -3'
miRNA:   3'- -CGUCGGCGAacUGGG--------------CCA-----UCAUGGUC- -5'
10806 5' -55.7 NC_002794.1 + 123669 0.66 0.935409
Target:  5'- uGguGUCGCUcGGCCCGGgcugGG-AgCAGg -3'
miRNA:   3'- -CguCGGCGAaCUGGGCCa---UCaUgGUC- -5'
10806 5' -55.7 NC_002794.1 + 101211 0.66 0.935409
Target:  5'- gGCGGCCGCccGGCagaUGGUcGUGCCc- -3'
miRNA:   3'- -CGUCGGCGaaCUGg--GCCAuCAUGGuc -5'
10806 5' -55.7 NC_002794.1 + 120061 0.67 0.925237
Target:  5'- gGCGGCCGCggaggccGACgCGGcGGUGgCGGc -3'
miRNA:   3'- -CGUCGGCGaa-----CUGgGCCaUCAUgGUC- -5'
10806 5' -55.7 NC_002794.1 + 45425 0.67 0.923091
Target:  5'- cGCAccGCCGCgagcgucucgcgGACCCGGUcgcgcgucagcGGgcCCAGg -3'
miRNA:   3'- -CGU--CGGCGaa----------CUGGGCCA-----------UCauGGUC- -5'
10806 5' -55.7 NC_002794.1 + 75596 0.67 0.922004
Target:  5'- gGCcGCCGCgcaaaacggcuccgUGAuCCCGGUcuGGUACCc- -3'
miRNA:   3'- -CGuCGGCGa-------------ACU-GGGCCA--UCAUGGuc -5'
10806 5' -55.7 NC_002794.1 + 44225 0.67 0.919803
Target:  5'- gGC-GCCGag-GGCUCGGUgccgggcggcucGGUGCCGGg -3'
miRNA:   3'- -CGuCGGCgaaCUGGGCCA------------UCAUGGUC- -5'
10806 5' -55.7 NC_002794.1 + 133927 0.67 0.919803
Target:  5'- gGCGGCCGC---GCCCGuccAGUugCGGg -3'
miRNA:   3'- -CGUCGGCGaacUGGGCca-UCAugGUC- -5'
10806 5' -55.7 NC_002794.1 + 105662 0.67 0.914136
Target:  5'- cGCGGCgCGCUccGCCCGGacc-GCCGGg -3'
miRNA:   3'- -CGUCG-GCGAacUGGGCCaucaUGGUC- -5'
10806 5' -55.7 NC_002794.1 + 189938 0.67 0.908239
Target:  5'- aCGGCCGCcgaugGACCCGGacggACCGa -3'
miRNA:   3'- cGUCGGCGaa---CUGGGCCaucaUGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.