miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10806 5' -55.7 NC_002794.1 + 114165 0.68 0.89576
Target:  5'- uCAGCCGCUccaaGAgCUGGUug-GCCAGg -3'
miRNA:   3'- cGUCGGCGAa---CUgGGCCAucaUGGUC- -5'
10806 5' -55.7 NC_002794.1 + 139682 0.68 0.89576
Target:  5'- uGCAGCCGCcggccGugCCGGacaGGUAgccCCAGu -3'
miRNA:   3'- -CGUCGGCGaa---CugGGCCa--UCAU---GGUC- -5'
10806 5' -55.7 NC_002794.1 + 122662 0.68 0.889184
Target:  5'- uGCuGGCgGCgcaGGCCCGGcuGUGCCGGu -3'
miRNA:   3'- -CG-UCGgCGaa-CUGGGCCauCAUGGUC- -5'
10806 5' -55.7 NC_002794.1 + 138160 0.68 0.868152
Target:  5'- cGCAGCCGgcauuugacgcuCUUGACCuCGGcg--GCCAGc -3'
miRNA:   3'- -CGUCGGC------------GAACUGG-GCCaucaUGGUC- -5'
10806 5' -55.7 NC_002794.1 + 86903 0.68 0.868152
Target:  5'- cGgGGCCGCc-GACCCGGUGacgcccGUGgCGGg -3'
miRNA:   3'- -CgUCGGCGaaCUGGGCCAU------CAUgGUC- -5'
10806 5' -55.7 NC_002794.1 + 53543 0.68 0.868152
Target:  5'- gGCGGCCGCacaGCCCGuggacGUAGacgGCCAGc -3'
miRNA:   3'- -CGUCGGCGaacUGGGC-----CAUCa--UGGUC- -5'
10806 5' -55.7 NC_002794.1 + 110676 0.68 0.860722
Target:  5'- uGCAGCaCGCUgugGucgucGCCCGaGUAGaugACCAGc -3'
miRNA:   3'- -CGUCG-GCGAa--C-----UGGGC-CAUCa--UGGUC- -5'
10806 5' -55.7 NC_002794.1 + 80407 0.69 0.853092
Target:  5'- --cGCCGC--GGCCCaGGUGGcGCCGGg -3'
miRNA:   3'- cguCGGCGaaCUGGG-CCAUCaUGGUC- -5'
10806 5' -55.7 NC_002794.1 + 154380 0.69 0.845267
Target:  5'- gGCGGCgGCggGcacGCCCGuucgcGUGGUGCCGGu -3'
miRNA:   3'- -CGUCGgCGaaC---UGGGC-----CAUCAUGGUC- -5'
10806 5' -55.7 NC_002794.1 + 33505 0.69 0.829059
Target:  5'- -aAGCUGCUgGACCCGG----GCCAGa -3'
miRNA:   3'- cgUCGGCGAaCUGGGCCaucaUGGUC- -5'
10806 5' -55.7 NC_002794.1 + 72032 0.7 0.815589
Target:  5'- cGCAGCCGCUugagcuguucgccgcUGACCCGca---GCCGGu -3'
miRNA:   3'- -CGUCGGCGA---------------ACUGGGCcaucaUGGUC- -5'
10806 5' -55.7 NC_002794.1 + 104264 0.7 0.812156
Target:  5'- gGCAGCCGCUcGGCC-GGcaccGUGCCGa -3'
miRNA:   3'- -CGUCGGCGAaCUGGgCCau--CAUGGUc -5'
10806 5' -55.7 NC_002794.1 + 178799 0.7 0.803462
Target:  5'- -aGGCgGCUcGGCCCGGgGGgACCGGg -3'
miRNA:   3'- cgUCGgCGAaCUGGGCCaUCaUGGUC- -5'
10806 5' -55.7 NC_002794.1 + 122452 0.7 0.800824
Target:  5'- aGCGGCUGCUgGGCUCGGUGaacgcgcucgcccagGCCGGg -3'
miRNA:   3'- -CGUCGGCGAaCUGGGCCAUca-------------UGGUC- -5'
10806 5' -55.7 NC_002794.1 + 56899 0.71 0.757898
Target:  5'- aGguGCCGCgcgUGGCCaCGGgcgccgGGcUGCCGGc -3'
miRNA:   3'- -CguCGGCGa--ACUGG-GCCa-----UC-AUGGUC- -5'
10806 5' -55.7 NC_002794.1 + 101581 0.71 0.748426
Target:  5'- cCGGCCGCcgcGGCCgGGggggcgGGUGCCGGc -3'
miRNA:   3'- cGUCGGCGaa-CUGGgCCa-----UCAUGGUC- -5'
10806 5' -55.7 NC_002794.1 + 32561 0.71 0.717492
Target:  5'- gGCAGCCGCggauagucgcGCgCGGcGGUGCCGGg -3'
miRNA:   3'- -CGUCGGCGaac-------UGgGCCaUCAUGGUC- -5'
10806 5' -55.7 NC_002794.1 + 182767 0.72 0.699754
Target:  5'- aGCAGCCGCac-GCCCGGUccaccaccUGCCAGc -3'
miRNA:   3'- -CGUCGGCGaacUGGGCCAuc------AUGGUC- -5'
10806 5' -55.7 NC_002794.1 + 190765 0.72 0.697771
Target:  5'- gGCGGCCGCgcGuCCCGGUAGaugaacucgguCCGGg -3'
miRNA:   3'- -CGUCGGCGaaCuGGGCCAUCau---------GGUC- -5'
10806 5' -55.7 NC_002794.1 + 100798 0.72 0.689819
Target:  5'- cGCGGCCGCUUcugcgccuacGugCCGGgcGgcggggGCCGGc -3'
miRNA:   3'- -CGUCGGCGAA----------CugGGCCauCa-----UGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.