miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10806 5' -55.7 NC_002794.1 + 12020 0.66 0.947675
Target:  5'- uGC-GCCGCc-GGCCCGGgcGUccgcgccuuccccuGCCGGu -3'
miRNA:   3'- -CGuCGGCGaaCUGGGCCauCA--------------UGGUC- -5'
10806 5' -55.7 NC_002794.1 + 12728 0.66 0.940148
Target:  5'- cGCGGCgaCGag-GGCCCGGUccgcUACCAGg -3'
miRNA:   3'- -CGUCG--GCgaaCUGGGCCAuc--AUGGUC- -5'
10806 5' -55.7 NC_002794.1 + 13862 0.66 0.940148
Target:  5'- cGCcGCCGCcgcGACCCGGUucuccgAGcGCCGc -3'
miRNA:   3'- -CGuCGGCGaa-CUGGGCCA------UCaUGGUc -5'
10806 5' -55.7 NC_002794.1 + 13986 0.66 0.93875
Target:  5'- uGCGGCCGCUauGCCCguuacaacgugcacGGUcggcaAGUGCUGGu -3'
miRNA:   3'- -CGUCGGCGAacUGGG--------------CCA-----UCAUGGUC- -5'
10806 5' -55.7 NC_002794.1 + 32561 0.71 0.717492
Target:  5'- gGCAGCCGCggauagucgcGCgCGGcGGUGCCGGg -3'
miRNA:   3'- -CGUCGGCGaac-------UGgGCCaUCAUGGUC- -5'
10806 5' -55.7 NC_002794.1 + 33505 0.69 0.829059
Target:  5'- -aAGCUGCUgGACCCGG----GCCAGa -3'
miRNA:   3'- cgUCGGCGAaCUGGGCCaucaUGGUC- -5'
10806 5' -55.7 NC_002794.1 + 44225 0.67 0.919803
Target:  5'- gGC-GCCGag-GGCUCGGUgccgggcggcucGGUGCCGGg -3'
miRNA:   3'- -CGuCGGCgaaCUGGGCCA------------UCAUGGUC- -5'
10806 5' -55.7 NC_002794.1 + 45425 0.67 0.923091
Target:  5'- cGCAccGCCGCgagcgucucgcgGACCCGGUcgcgcgucagcGGgcCCAGg -3'
miRNA:   3'- -CGU--CGGCGaa----------CUGGGCCA-----------UCauGGUC- -5'
10806 5' -55.7 NC_002794.1 + 53543 0.68 0.868152
Target:  5'- gGCGGCCGCacaGCCCGuggacGUAGacgGCCAGc -3'
miRNA:   3'- -CGUCGGCGaacUGGGC-----CAUCa--UGGUC- -5'
10806 5' -55.7 NC_002794.1 + 56899 0.71 0.757898
Target:  5'- aGguGCCGCgcgUGGCCaCGGgcgccgGGcUGCCGGc -3'
miRNA:   3'- -CguCGGCGa--ACUGG-GCCa-----UC-AUGGUC- -5'
10806 5' -55.7 NC_002794.1 + 68314 0.66 0.95299
Target:  5'- gGCGGCCGaCgcguuccgcGGCCUGGUG--ACCGGg -3'
miRNA:   3'- -CGUCGGC-Gaa-------CUGGGCCAUcaUGGUC- -5'
10806 5' -55.7 NC_002794.1 + 71613 1.12 0.002723
Target:  5'- aGCAGCCGCUUGACCCGGUAGUACCAGg -3'
miRNA:   3'- -CGUCGGCGAACUGGGCCAUCAUGGUC- -5'
10806 5' -55.7 NC_002794.1 + 72032 0.7 0.815589
Target:  5'- cGCAGCCGCUugagcuguucgccgcUGACCCGca---GCCGGu -3'
miRNA:   3'- -CGUCGGCGA---------------ACUGGGCcaucaUGGUC- -5'
10806 5' -55.7 NC_002794.1 + 75596 0.67 0.922004
Target:  5'- gGCcGCCGCgcaaaacggcuccgUGAuCCCGGUcuGGUACCc- -3'
miRNA:   3'- -CGuCGGCGa-------------ACU-GGGCCA--UCAUGGuc -5'
10806 5' -55.7 NC_002794.1 + 80407 0.69 0.853092
Target:  5'- --cGCCGC--GGCCCaGGUGGcGCCGGg -3'
miRNA:   3'- cguCGGCGaaCUGGG-CCAUCaUGGUC- -5'
10806 5' -55.7 NC_002794.1 + 86903 0.68 0.868152
Target:  5'- cGgGGCCGCc-GACCCGGUGacgcccGUGgCGGg -3'
miRNA:   3'- -CgUCGGCGaaCUGGGCCAU------CAUgGUC- -5'
10806 5' -55.7 NC_002794.1 + 100798 0.72 0.689819
Target:  5'- cGCGGCCGCUUcugcgccuacGugCCGGgcGgcggggGCCGGc -3'
miRNA:   3'- -CGUCGGCGAA----------CugGGCCauCa-----UGGUC- -5'
10806 5' -55.7 NC_002794.1 + 101211 0.66 0.935409
Target:  5'- gGCGGCCGCccGGCagaUGGUcGUGCCc- -3'
miRNA:   3'- -CGUCGGCGaaCUGg--GCCAuCAUGGuc -5'
10806 5' -55.7 NC_002794.1 + 101581 0.71 0.748426
Target:  5'- cCGGCCGCcgcGGCCgGGggggcgGGUGCCGGc -3'
miRNA:   3'- cGUCGGCGaa-CUGGgCCa-----UCAUGGUC- -5'
10806 5' -55.7 NC_002794.1 + 104264 0.7 0.812156
Target:  5'- gGCAGCCGCUcGGCC-GGcaccGUGCCGa -3'
miRNA:   3'- -CGUCGGCGAaCUGGgCCau--CAUGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.