miRNA display CGI


Results 1 - 20 of 284 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10807 3' -61.3 NC_002794.1 + 113873 0.66 0.781364
Target:  5'- cAGGCGCGCUcgGCCGCggCgCGCGUCgGc -3'
miRNA:   3'- -UCUGUGCGG--CGGCGgaG-GUGCAGgCu -5'
10807 3' -61.3 NC_002794.1 + 53064 0.66 0.781364
Target:  5'- uAGGCAgCGCCgcGCCGCCagcUCGCGgcaCCGGg -3'
miRNA:   3'- -UCUGU-GCGG--CGGCGGa--GGUGCa--GGCU- -5'
10807 3' -61.3 NC_002794.1 + 22997 0.66 0.781364
Target:  5'- cGGGCaaACGCCGCCgGUCUUCGugagGUCCGu -3'
miRNA:   3'- -UCUG--UGCGGCGG-CGGAGGUg---CAGGCu -5'
10807 3' -61.3 NC_002794.1 + 24085 0.66 0.781364
Target:  5'- cGGGCggGCGUCGCCGUauuaaagaCCGCGaCCGAu -3'
miRNA:   3'- -UCUG--UGCGGCGGCGga------GGUGCaGGCU- -5'
10807 3' -61.3 NC_002794.1 + 26108 0.66 0.781364
Target:  5'- cGGCGauCGCCGUgggccUGCCUCgACGaCCGAc -3'
miRNA:   3'- uCUGU--GCGGCG-----GCGGAGgUGCaGGCU- -5'
10807 3' -61.3 NC_002794.1 + 61444 0.66 0.781364
Target:  5'- cAGACguACGuCCGCCGCCUggcccucgaagaCCAC-UCCa- -3'
miRNA:   3'- -UCUG--UGC-GGCGGCGGA------------GGUGcAGGcu -5'
10807 3' -61.3 NC_002794.1 + 49423 0.66 0.781364
Target:  5'- cGGCG-GCgGCCGUCaCgGCGUCCGGc -3'
miRNA:   3'- uCUGUgCGgCGGCGGaGgUGCAGGCU- -5'
10807 3' -61.3 NC_002794.1 + 38414 0.66 0.781364
Target:  5'- cGGCgaGCGCuCGCCGaCUCCAUGgcggcgggCCGGa -3'
miRNA:   3'- uCUG--UGCG-GCGGCgGAGGUGCa-------GGCU- -5'
10807 3' -61.3 NC_002794.1 + 50705 0.66 0.781364
Target:  5'- cGGuCACuUCGCCGCCUC-GCGUUCGc -3'
miRNA:   3'- -UCuGUGcGGCGGCGGAGgUGCAGGCu -5'
10807 3' -61.3 NC_002794.1 + 123578 0.66 0.781364
Target:  5'- cGcCACgGCCGCCGCCcgugCaGCGUCCc- -3'
miRNA:   3'- uCuGUG-CGGCGGCGGa---GgUGCAGGcu -5'
10807 3' -61.3 NC_002794.1 + 30091 0.66 0.781364
Target:  5'- gAGGCGCGCgGCCGgucCCgacCCAcCGcCCGGg -3'
miRNA:   3'- -UCUGUGCGgCGGC---GGa--GGU-GCaGGCU- -5'
10807 3' -61.3 NC_002794.1 + 110310 0.66 0.781364
Target:  5'- gGGACucucCGCuCGCCGCCgcgacgCCGCGcggggggucUCCGc -3'
miRNA:   3'- -UCUGu---GCG-GCGGCGGa-----GGUGC---------AGGCu -5'
10807 3' -61.3 NC_002794.1 + 101116 0.66 0.781364
Target:  5'- gAGGC-CGCCGCCGUggCgcgCCugGcCCGc -3'
miRNA:   3'- -UCUGuGCGGCGGCG--Ga--GGugCaGGCu -5'
10807 3' -61.3 NC_002794.1 + 82409 0.66 0.781364
Target:  5'- -aACACGCuCGCCGCCcgUCUuCGUCUu- -3'
miRNA:   3'- ucUGUGCG-GCGGCGG--AGGuGCAGGcu -5'
10807 3' -61.3 NC_002794.1 + 20211 0.66 0.780491
Target:  5'- -cGCAcCGCCGaCCGCCauggcucUCCGCGcCUGGa -3'
miRNA:   3'- ucUGU-GCGGC-GGCGG-------AGGUGCaGGCU- -5'
10807 3' -61.3 NC_002794.1 + 143858 0.66 0.77611
Target:  5'- cAGGCGauCGCCGCCgcggcgucaaauaugGCCUCgccgaGCGUCCu- -3'
miRNA:   3'- -UCUGU--GCGGCGG---------------CGGAGg----UGCAGGcu -5'
10807 3' -61.3 NC_002794.1 + 105473 0.66 0.772584
Target:  5'- gGGACGacgaGCCGUCGUCUCCG-GUCg-- -3'
miRNA:   3'- -UCUGUg---CGGCGGCGGAGGUgCAGgcu -5'
10807 3' -61.3 NC_002794.1 + 55004 0.66 0.772584
Target:  5'- cGACuCGCCGggcguCCGCCgCCGCG-CCGc -3'
miRNA:   3'- uCUGuGCGGC-----GGCGGaGGUGCaGGCu -5'
10807 3' -61.3 NC_002794.1 + 121910 0.66 0.772584
Target:  5'- cGACugGaCGUCGCCcgCCGCGggggaagaggCCGAc -3'
miRNA:   3'- uCUGugCgGCGGCGGa-GGUGCa---------GGCU- -5'
10807 3' -61.3 NC_002794.1 + 59406 0.66 0.772584
Target:  5'- --cUACGCCGugcccuuccaCCGCUUCUACG-CCGAc -3'
miRNA:   3'- ucuGUGCGGC----------GGCGGAGGUGCaGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.