miRNA display CGI


Results 1 - 20 of 284 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10807 3' -61.3 NC_002794.1 + 71450 1.08 0.001745
Target:  5'- cAGACACGCCGCCGCCUCCACGUCCGAc -3'
miRNA:   3'- -UCUGUGCGGCGGCGGAGGUGCAGGCU- -5'
10807 3' -61.3 NC_002794.1 + 49283 0.82 0.104419
Target:  5'- cGGCccggGCGCCGCCGCCUCCcCGUCCc- -3'
miRNA:   3'- uCUG----UGCGGCGGCGGAGGuGCAGGcu -5'
10807 3' -61.3 NC_002794.1 + 31009 0.82 0.109725
Target:  5'- cGGACGuCGCCGCCGCCUCC---UCCGAg -3'
miRNA:   3'- -UCUGU-GCGGCGGCGGAGGugcAGGCU- -5'
10807 3' -61.3 NC_002794.1 + 38503 0.8 0.130342
Target:  5'- cGGCGCcggucGCCGCCGCCUCCGCGaUCCc- -3'
miRNA:   3'- uCUGUG-----CGGCGGCGGAGGUGC-AGGcu -5'
10807 3' -61.3 NC_002794.1 + 83780 0.79 0.158249
Target:  5'- cGACGcCGCCGCCGCgUCCGcCGUCCu- -3'
miRNA:   3'- uCUGU-GCGGCGGCGgAGGU-GCAGGcu -5'
10807 3' -61.3 NC_002794.1 + 193897 0.79 0.166025
Target:  5'- -cAC-CGCCGCCGCCUCCuCGUCCu- -3'
miRNA:   3'- ucUGuGCGGCGGCGGAGGuGCAGGcu -5'
10807 3' -61.3 NC_002794.1 + 32290 0.79 0.170041
Target:  5'- cGACGcCGCCGCCGCCgcggcggCCGCG-CCGGc -3'
miRNA:   3'- uCUGU-GCGGCGGCGGa------GGUGCaGGCU- -5'
10807 3' -61.3 NC_002794.1 + 81550 0.78 0.178332
Target:  5'- uGGACGgcugcCGCCGCCGCCgccgCCGCG-CCGGa -3'
miRNA:   3'- -UCUGU-----GCGGCGGCGGa---GGUGCaGGCU- -5'
10807 3' -61.3 NC_002794.1 + 17279 0.78 0.186981
Target:  5'- cGGGCACGCCGCCGCCgacggUCACGacgaUCaCGAc -3'
miRNA:   3'- -UCUGUGCGGCGGCGGa----GGUGC----AG-GCU- -5'
10807 3' -61.3 NC_002794.1 + 35392 0.77 0.210233
Target:  5'- cGGACuACGUCacCCGCCUCCGCGUCuCGAc -3'
miRNA:   3'- -UCUG-UGCGGc-GGCGGAGGUGCAG-GCU- -5'
10807 3' -61.3 NC_002794.1 + 63222 0.77 0.215173
Target:  5'- cGACcUGCCGCCccugcGCCUCCGCG-CCGAa -3'
miRNA:   3'- uCUGuGCGGCGG-----CGGAGGUGCaGGCU- -5'
10807 3' -61.3 NC_002794.1 + 145807 0.76 0.235934
Target:  5'- cGACgACGCCGCCGCCggCgGCGagCCGAg -3'
miRNA:   3'- uCUG-UGCGGCGGCGGa-GgUGCa-GGCU- -5'
10807 3' -61.3 NC_002794.1 + 107064 0.76 0.241381
Target:  5'- cGGGCGCGgCGCCGCCggCAUGUCgGAg -3'
miRNA:   3'- -UCUGUGCgGCGGCGGagGUGCAGgCU- -5'
10807 3' -61.3 NC_002794.1 + 46586 0.76 0.243589
Target:  5'- cGACACGCgacccugaaccugucCGCCGCCgUCCGCG-CCGGg -3'
miRNA:   3'- uCUGUGCG---------------GCGGCGG-AGGUGCaGGCU- -5'
10807 3' -61.3 NC_002794.1 + 181404 0.76 0.252588
Target:  5'- cGGGC-CgGCCGCCGCCaccgCCAUGUCCGc -3'
miRNA:   3'- -UCUGuG-CGGCGGCGGa---GGUGCAGGCu -5'
10807 3' -61.3 NC_002794.1 + 106960 0.75 0.276282
Target:  5'- gAGACACG-CGUCGCCUCgCGCGgcggCCGGc -3'
miRNA:   3'- -UCUGUGCgGCGGCGGAG-GUGCa---GGCU- -5'
10807 3' -61.3 NC_002794.1 + 76455 0.75 0.28878
Target:  5'- cGugGCGcCCGCC-CCUCCAcCGUCCGc -3'
miRNA:   3'- uCugUGC-GGCGGcGGAGGU-GCAGGCu -5'
10807 3' -61.3 NC_002794.1 + 100066 0.75 0.301718
Target:  5'- cGACACGCUGgagcuggcgcCCGuCUUCCACGUCCGc -3'
miRNA:   3'- uCUGUGCGGC----------GGC-GGAGGUGCAGGCu -5'
10807 3' -61.3 NC_002794.1 + 11802 0.75 0.301718
Target:  5'- cGugGCGCCGCCGCCgCCGuCG-CCGc -3'
miRNA:   3'- uCugUGCGGCGGCGGaGGU-GCaGGCu -5'
10807 3' -61.3 NC_002794.1 + 107190 0.74 0.308353
Target:  5'- cGGCGcCGCCGCCGCCggCCuCGcCCGGc -3'
miRNA:   3'- uCUGU-GCGGCGGCGGa-GGuGCaGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.