miRNA display CGI


Results 21 - 40 of 284 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10807 3' -61.3 NC_002794.1 + 105473 0.66 0.772584
Target:  5'- gGGACGacgaGCCGUCGUCUCCG-GUCg-- -3'
miRNA:   3'- -UCUGUg---CGGCGGCGGAGGUgCAGgcu -5'
10807 3' -61.3 NC_002794.1 + 68944 0.66 0.772584
Target:  5'- cGGGCcgcgGCGCCGgCGCCucucccuccUCCGCGggCCGc -3'
miRNA:   3'- -UCUG----UGCGGCgGCGG---------AGGUGCa-GGCu -5'
10807 3' -61.3 NC_002794.1 + 194261 0.66 0.7717
Target:  5'- -aGCuCGCCcgacGCCGCCUcgcacggcgcgcgCCACGUCCa- -3'
miRNA:   3'- ucUGuGCGG----CGGCGGA-------------GGUGCAGGcu -5'
10807 3' -61.3 NC_002794.1 + 112556 0.66 0.769041
Target:  5'- gGGGCuCGCCGCCGgccacccggccgcUCUCCAgcugcgccagggccCGUUCGAa -3'
miRNA:   3'- -UCUGuGCGGCGGC-------------GGAGGU--------------GCAGGCU- -5'
10807 3' -61.3 NC_002794.1 + 113940 0.66 0.769041
Target:  5'- cGACGgGCCGCUGCCgggcuuccugcagCCAC-UCCu- -3'
miRNA:   3'- uCUGUgCGGCGGCGGa------------GGUGcAGGcu -5'
10807 3' -61.3 NC_002794.1 + 62603 0.66 0.767263
Target:  5'- aGGGC-CaCCGCCGCCUUCggagagcugcucuggGCGUCgGAc -3'
miRNA:   3'- -UCUGuGcGGCGGCGGAGG---------------UGCAGgCU- -5'
10807 3' -61.3 NC_002794.1 + 119416 0.66 0.763694
Target:  5'- cGAuCACuCCGuuGUCUCgCAgGUCCGAc -3'
miRNA:   3'- uCU-GUGcGGCggCGGAG-GUgCAGGCU- -5'
10807 3' -61.3 NC_002794.1 + 18064 0.66 0.763694
Target:  5'- -uGCACGCCGCCuGUCUgUGCGUgUCGGu -3'
miRNA:   3'- ucUGUGCGGCGG-CGGAgGUGCA-GGCU- -5'
10807 3' -61.3 NC_002794.1 + 68828 0.66 0.763694
Target:  5'- cGGCgACGCCGCCGgCgCuCGCGguccCCGAc -3'
miRNA:   3'- uCUG-UGCGGCGGCgGaG-GUGCa---GGCU- -5'
10807 3' -61.3 NC_002794.1 + 183955 0.66 0.763694
Target:  5'- cGACGCGguccccgucaCGCUGCgCUCCaccGCGUCCGc -3'
miRNA:   3'- uCUGUGCg---------GCGGCG-GAGG---UGCAGGCu -5'
10807 3' -61.3 NC_002794.1 + 49099 0.66 0.763694
Target:  5'- cGuCGCGCCGgCG-CUCgGCGUCCu- -3'
miRNA:   3'- uCuGUGCGGCgGCgGAGgUGCAGGcu -5'
10807 3' -61.3 NC_002794.1 + 152569 0.66 0.763694
Target:  5'- cGGCGCuucaCCGCCGCggcggccgCCACGUCCc- -3'
miRNA:   3'- uCUGUGc---GGCGGCGga------GGUGCAGGcu -5'
10807 3' -61.3 NC_002794.1 + 90095 0.66 0.757408
Target:  5'- cGGCACGCUcugcgccgcggugGgCGCCgugagucuguaccgCUACGUCCGAg -3'
miRNA:   3'- uCUGUGCGG-------------CgGCGGa-------------GGUGCAGGCU- -5'
10807 3' -61.3 NC_002794.1 + 58407 0.66 0.754699
Target:  5'- uGGAgCACGCCaaggugcgGCCGCCgCCagACG-CCGAg -3'
miRNA:   3'- -UCU-GUGCGG--------CGGCGGaGG--UGCaGGCU- -5'
10807 3' -61.3 NC_002794.1 + 183615 0.66 0.754699
Target:  5'- -cGCGCgGCCGgCGCCcCCGCGcccCCGAc -3'
miRNA:   3'- ucUGUG-CGGCgGCGGaGGUGCa--GGCU- -5'
10807 3' -61.3 NC_002794.1 + 40493 0.66 0.754699
Target:  5'- cGGCcgGCGCuCGCCGCUcgagUCACGgccgCCGAc -3'
miRNA:   3'- uCUG--UGCG-GCGGCGGa---GGUGCa---GGCU- -5'
10807 3' -61.3 NC_002794.1 + 150208 0.66 0.754699
Target:  5'- cGACGagcgGCUGCUGCCgagCUGCGUgCGAc -3'
miRNA:   3'- uCUGUg---CGGCGGCGGa--GGUGCAgGCU- -5'
10807 3' -61.3 NC_002794.1 + 120842 0.66 0.752888
Target:  5'- gGGGCuaucccuGCGCgGCCGUCgUCCAgcgccucggcuggUGUCCGAa -3'
miRNA:   3'- -UCUG-------UGCGgCGGCGG-AGGU-------------GCAGGCU- -5'
10807 3' -61.3 NC_002794.1 + 81378 0.66 0.745608
Target:  5'- gGGAUcCGCCGCaaCGCCUCUGgcUCCGGu -3'
miRNA:   3'- -UCUGuGCGGCG--GCGGAGGUgcAGGCU- -5'
10807 3' -61.3 NC_002794.1 + 80983 0.66 0.745608
Target:  5'- ----cUGCCGCUGcCCUCCGgucuggucauCGUCCGAc -3'
miRNA:   3'- ucuguGCGGCGGC-GGAGGU----------GCAGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.