miRNA display CGI


Results 1 - 20 of 284 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10807 3' -61.3 NC_002794.1 + 1555 0.67 0.689477
Target:  5'- gAGGCAC-CCGCCgGCCUUauacgGgGUCCGGg -3'
miRNA:   3'- -UCUGUGcGGCGG-CGGAGg----UgCAGGCU- -5'
10807 3' -61.3 NC_002794.1 + 1890 0.67 0.689477
Target:  5'- gAGGCAC-CCGCCgGCCUUauacgGgGUCCGGg -3'
miRNA:   3'- -UCUGUGcGGCGG-CGGAGg----UgCAGGCU- -5'
10807 3' -61.3 NC_002794.1 + 1953 0.67 0.727169
Target:  5'- gAGGCGC-CCGCCgGCCUUauacgGgGUCCGGg -3'
miRNA:   3'- -UCUGUGcGGCGG-CGGAGg----UgCAGGCU- -5'
10807 3' -61.3 NC_002794.1 + 2015 0.67 0.727169
Target:  5'- gAGGCGC-CCGCCgGCCUUauacgGgGUCCGGg -3'
miRNA:   3'- -UCUGUGcGGCGG-CGGAGg----UgCAGGCU- -5'
10807 3' -61.3 NC_002794.1 + 10235 0.66 0.745608
Target:  5'- aGGugACcCCGCCGUCUCgugucCGUUCGAg -3'
miRNA:   3'- -UCugUGcGGCGGCGGAGgu---GCAGGCU- -5'
10807 3' -61.3 NC_002794.1 + 10321 0.66 0.745608
Target:  5'- cGACGacucgGCCGUCGUCggcgCCGCGaCCGGg -3'
miRNA:   3'- uCUGUg----CGGCGGCGGa---GGUGCaGGCU- -5'
10807 3' -61.3 NC_002794.1 + 11070 0.7 0.499431
Target:  5'- cAGACuugguACGCCGCCuGCCUCguCGUCgGc -3'
miRNA:   3'- -UCUG-----UGCGGCGG-CGGAGguGCAGgCu -5'
10807 3' -61.3 NC_002794.1 + 11802 0.75 0.301718
Target:  5'- cGugGCGCCGCCGCCgCCGuCG-CCGc -3'
miRNA:   3'- uCugUGCGGCGGCGGaGGU-GCaGGCu -5'
10807 3' -61.3 NC_002794.1 + 12010 0.7 0.545707
Target:  5'- uGGACugauguGCGCCGCCGgC-CCggGCGUCCGc -3'
miRNA:   3'- -UCUG------UGCGGCGGCgGaGG--UGCAGGCu -5'
10807 3' -61.3 NC_002794.1 + 12170 0.71 0.472513
Target:  5'- cGGAU-CGUCGCCGCCgacgccgCCGCGgCCGGg -3'
miRNA:   3'- -UCUGuGCGGCGGCGGa------GGUGCaGGCU- -5'
10807 3' -61.3 NC_002794.1 + 12228 0.69 0.602885
Target:  5'- cGGCgGCGCCGgcggCGCCgUCCGCGgcgCCGAu -3'
miRNA:   3'- uCUG-UGCGGCg---GCGG-AGGUGCa--GGCU- -5'
10807 3' -61.3 NC_002794.1 + 13663 0.7 0.499431
Target:  5'- uGGCACG-UGCCGCCgCCAC-UCCGGu -3'
miRNA:   3'- uCUGUGCgGCGGCGGaGGUGcAGGCU- -5'
10807 3' -61.3 NC_002794.1 + 13854 0.67 0.689477
Target:  5'- -cGCcuCGUCGCCGCCgCCGCGacccgguucUCCGAg -3'
miRNA:   3'- ucUGu-GCGGCGGCGGaGGUGC---------AGGCU- -5'
10807 3' -61.3 NC_002794.1 + 14646 0.69 0.583687
Target:  5'- cGGAgACGCCGgCGCCgCgGCGucggUCCGAc -3'
miRNA:   3'- -UCUgUGCGGCgGCGGaGgUGC----AGGCU- -5'
10807 3' -61.3 NC_002794.1 + 14864 0.69 0.574132
Target:  5'- -uAUACGCCaGCCGCCcgguucgCCGCGagCCGAg -3'
miRNA:   3'- ucUGUGCGG-CGGCGGa------GGUGCa-GGCU- -5'
10807 3' -61.3 NC_002794.1 + 14950 0.67 0.689477
Target:  5'- cGGCuCGcCCGCCGCCUcgaagCCGCGUaacgCGAc -3'
miRNA:   3'- uCUGuGC-GGCGGCGGA-----GGUGCAg---GCU- -5'
10807 3' -61.3 NC_002794.1 + 16481 0.73 0.373039
Target:  5'- -aGCcCGCCGCCGCCUCCGcCG-CCa- -3'
miRNA:   3'- ucUGuGCGGCGGCGGAGGU-GCaGGcu -5'
10807 3' -61.3 NC_002794.1 + 16521 0.67 0.698982
Target:  5'- cGGCGuCGCCaCCGCCgUCCccgGCGUCCc- -3'
miRNA:   3'- uCUGU-GCGGcGGCGG-AGG---UGCAGGcu -5'
10807 3' -61.3 NC_002794.1 + 16587 0.71 0.49038
Target:  5'- -cGC-CGCCGCCGUCUCCgGCGUCg-- -3'
miRNA:   3'- ucUGuGCGGCGGCGGAGG-UGCAGgcu -5'
10807 3' -61.3 NC_002794.1 + 16883 0.72 0.437805
Target:  5'- cGGCAgcaaccacCGCCGCCGCgacagCCGCGaUCCGAg -3'
miRNA:   3'- uCUGU--------GCGGCGGCGga---GGUGC-AGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.