miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10809 3' -57.2 NC_002794.1 + 116250 0.66 0.904208
Target:  5'- -gUGCGCcGUacaaaguacACGAaGGCGGCGUCGu -3'
miRNA:   3'- uaGCGCGaCA---------UGCUgUCGCCGCAGUg -5'
10809 3' -57.2 NC_002794.1 + 19325 0.66 0.904208
Target:  5'- -cCGCGCUG-GCGACccGCGcGCcgGUCACc -3'
miRNA:   3'- uaGCGCGACaUGCUGu-CGC-CG--CAGUG- -5'
10809 3' -57.2 NC_002794.1 + 184911 0.66 0.904208
Target:  5'- cUCGCGCgGgaacauCGGCAGCcGGCGgUCGu -3'
miRNA:   3'- uAGCGCGaCau----GCUGUCG-CCGC-AGUg -5'
10809 3' -57.2 NC_002794.1 + 32034 0.66 0.904208
Target:  5'- --gGCGCUGc-CGAuaCAGCGGCGUguccucCACg -3'
miRNA:   3'- uagCGCGACauGCU--GUCGCCGCA------GUG- -5'
10809 3' -57.2 NC_002794.1 + 112337 0.66 0.904208
Target:  5'- -gCGCGCcGgccgGCGGCgccGGCGGCGggGCg -3'
miRNA:   3'- uaGCGCGaCa---UGCUG---UCGCCGCagUG- -5'
10809 3' -57.2 NC_002794.1 + 30970 0.66 0.89794
Target:  5'- uGUCGUGacgGUccuccccgGCGACGGCGGgGUCu- -3'
miRNA:   3'- -UAGCGCga-CA--------UGCUGUCGCCgCAGug -5'
10809 3' -57.2 NC_002794.1 + 119239 0.66 0.89794
Target:  5'- gGUCGaggaGCgUGUccuCGGCGGCGGCGUaguGCu -3'
miRNA:   3'- -UAGCg---CG-ACAu--GCUGUCGCCGCAg--UG- -5'
10809 3' -57.2 NC_002794.1 + 195215 0.66 0.89794
Target:  5'- -cCGCcaGCU--GCGGCAgcagcccgcGCGGCGUCACc -3'
miRNA:   3'- uaGCG--CGAcaUGCUGU---------CGCCGCAGUG- -5'
10809 3' -57.2 NC_002794.1 + 67415 0.66 0.89794
Target:  5'- cGUCgGCGCca-GCGuCGGCGGCGugUCGCg -3'
miRNA:   3'- -UAG-CGCGacaUGCuGUCGCCGC--AGUG- -5'
10809 3' -57.2 NC_002794.1 + 188352 0.66 0.89794
Target:  5'- cGUCGCGCccGUcCGGcCGGCGGCGg--- -3'
miRNA:   3'- -UAGCGCGa-CAuGCU-GUCGCCGCagug -5'
10809 3' -57.2 NC_002794.1 + 108309 0.66 0.891449
Target:  5'- cGUUGCGCcGgcggugggucUugGACGGCGGCG-CAg -3'
miRNA:   3'- -UAGCGCGaC----------AugCUGUCGCCGCaGUg -5'
10809 3' -57.2 NC_002794.1 + 194202 0.66 0.891449
Target:  5'- -cCGCGUgGUACGACAcCGGCGg--- -3'
miRNA:   3'- uaGCGCGaCAUGCUGUcGCCGCagug -5'
10809 3' -57.2 NC_002794.1 + 77648 0.66 0.891449
Target:  5'- cAUCGCccacCUGUGCGGCccgcgggucuGCGGgGUCAUc -3'
miRNA:   3'- -UAGCGc---GACAUGCUGu---------CGCCgCAGUG- -5'
10809 3' -57.2 NC_002794.1 + 127339 0.66 0.891449
Target:  5'- -gCGcCGCUGccgagACGcucGCGGCGGCGgCGCg -3'
miRNA:   3'- uaGC-GCGACa----UGC---UGUCGCCGCaGUG- -5'
10809 3' -57.2 NC_002794.1 + 48004 0.66 0.884737
Target:  5'- -gCGUGCaguggucGUACaGCAGCuucGGCGUCACg -3'
miRNA:   3'- uaGCGCGa------CAUGcUGUCG---CCGCAGUG- -5'
10809 3' -57.2 NC_002794.1 + 102138 0.66 0.884737
Target:  5'- --aGCGUcuucGUGCGcuuCGGCGGCGUgCGCg -3'
miRNA:   3'- uagCGCGa---CAUGCu--GUCGCCGCA-GUG- -5'
10809 3' -57.2 NC_002794.1 + 117754 0.66 0.884737
Target:  5'- -cCGCGCgugGUGCG-CAGCaGGuCGUCcaGCa -3'
miRNA:   3'- uaGCGCGa--CAUGCuGUCG-CC-GCAG--UG- -5'
10809 3' -57.2 NC_002794.1 + 61164 0.66 0.884737
Target:  5'- -gCGCGCgGUcCGGauCGGCGGCugGUCGCu -3'
miRNA:   3'- uaGCGCGaCAuGCU--GUCGCCG--CAGUG- -5'
10809 3' -57.2 NC_002794.1 + 182177 0.66 0.882681
Target:  5'- --aGCgGCUGUAccauaacggggccuCGGCGcCGGCGUCGCg -3'
miRNA:   3'- uagCG-CGACAU--------------GCUGUcGCCGCAGUG- -5'
10809 3' -57.2 NC_002794.1 + 94395 0.66 0.877808
Target:  5'- uGUCGCGC-GUGCGGgGaccGCGGUGUggggCGCg -3'
miRNA:   3'- -UAGCGCGaCAUGCUgU---CGCCGCA----GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.