miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10809 3' -57.2 NC_002794.1 + 69683 1.08 0.003096
Target:  5'- cAUCGCGCUGUACGACAGCGGCGUCACg -3'
miRNA:   3'- -UAGCGCGACAUGCUGUCGCCGCAGUG- -5'
10809 3' -57.2 NC_002794.1 + 107230 0.8 0.230623
Target:  5'- -gCGCGCg--ACGGgGGCGGCGUCGCg -3'
miRNA:   3'- uaGCGCGacaUGCUgUCGCCGCAGUG- -5'
10809 3' -57.2 NC_002794.1 + 82037 0.79 0.241898
Target:  5'- gAUCGCGUgggcGgcgGCGGCGGCGGCGUCGu -3'
miRNA:   3'- -UAGCGCGa---Ca--UGCUGUCGCCGCAGUg -5'
10809 3' -57.2 NC_002794.1 + 55281 0.76 0.362976
Target:  5'- --gGCGgUGgcggcgacgaggGCGGCGGCGGCGUCGCg -3'
miRNA:   3'- uagCGCgACa-----------UGCUGUCGCCGCAGUG- -5'
10809 3' -57.2 NC_002794.1 + 154362 0.76 0.379759
Target:  5'- -cCGCGCgGUccaggccGCGGCGGCGGCGggCACg -3'
miRNA:   3'- uaGCGCGaCA-------UGCUGUCGCCGCa-GUG- -5'
10809 3' -57.2 NC_002794.1 + 122187 0.75 0.431361
Target:  5'- -gCGCGCgUGUGCGAC-GCGGCGaaGCg -3'
miRNA:   3'- uaGCGCG-ACAUGCUGuCGCCGCagUG- -5'
10809 3' -57.2 NC_002794.1 + 65920 0.74 0.467341
Target:  5'- cGUCGuCGCcg-GCGGCGGUGGCGUCGg -3'
miRNA:   3'- -UAGC-GCGacaUGCUGUCGCCGCAGUg -5'
10809 3' -57.2 NC_002794.1 + 185106 0.73 0.495314
Target:  5'- gGUCGUGUUGUacagcaugugcACGACcaGGCGGCGcCGCg -3'
miRNA:   3'- -UAGCGCGACA-----------UGCUG--UCGCCGCaGUG- -5'
10809 3' -57.2 NC_002794.1 + 184570 0.73 0.514378
Target:  5'- -aCGCGCcGccGCGGCGGCGGCGgcCACg -3'
miRNA:   3'- uaGCGCGaCa-UGCUGUCGCCGCa-GUG- -5'
10809 3' -57.2 NC_002794.1 + 20060 0.72 0.562238
Target:  5'- gAUCGCGCUGUuCGAC-GCGGUcuucaacGUCAUc -3'
miRNA:   3'- -UAGCGCGACAuGCUGuCGCCG-------CAGUG- -5'
10809 3' -57.2 NC_002794.1 + 21920 0.72 0.573161
Target:  5'- --gGCGgaG-ACGACGGCGGCGgCGCg -3'
miRNA:   3'- uagCGCgaCaUGCUGUCGCCGCaGUG- -5'
10809 3' -57.2 NC_002794.1 + 49013 0.72 0.583133
Target:  5'- -cCGCGCcGcgGCGGCcGCGGCGUCGu -3'
miRNA:   3'- uaGCGCGaCa-UGCUGuCGCCGCAGUg -5'
10809 3' -57.2 NC_002794.1 + 99586 0.72 0.583133
Target:  5'- -gUGCGgaGggcGCGGCGGCGGCG-CGCg -3'
miRNA:   3'- uaGCGCgaCa--UGCUGUCGCCGCaGUG- -5'
10809 3' -57.2 NC_002794.1 + 190433 0.72 0.593141
Target:  5'- --aGCaGCagGUGCGACAcgaaauacgugcGCGGCGUCGCg -3'
miRNA:   3'- uagCG-CGa-CAUGCUGU------------CGCCGCAGUG- -5'
10809 3' -57.2 NC_002794.1 + 183069 0.72 0.603175
Target:  5'- cUCGCGCUGgacgggaACGAgAGCgaGGuCGUCACg -3'
miRNA:   3'- uAGCGCGACa------UGCUgUCG--CC-GCAGUG- -5'
10809 3' -57.2 NC_002794.1 + 106974 0.71 0.61323
Target:  5'- cUCGCGCggcggccgGcACGGCGGUGGCGgCGCu -3'
miRNA:   3'- uAGCGCGa-------CaUGCUGUCGCCGCaGUG- -5'
10809 3' -57.2 NC_002794.1 + 105946 0.71 0.633376
Target:  5'- -aCGCGCUGUACGAaCGGCugggGGcCGcCGCg -3'
miRNA:   3'- uaGCGCGACAUGCU-GUCG----CC-GCaGUG- -5'
10809 3' -57.2 NC_002794.1 + 37893 0.71 0.64345
Target:  5'- --gGCGgUGgcgGCGGCAGCGGC-UCGCc -3'
miRNA:   3'- uagCGCgACa--UGCUGUCGCCGcAGUG- -5'
10809 3' -57.2 NC_002794.1 + 125433 0.71 0.650498
Target:  5'- cGUCGCGaaucggaacaaggGCGACGGCGGCGagCACg -3'
miRNA:   3'- -UAGCGCgaca---------UGCUGUCGCCGCa-GUG- -5'
10809 3' -57.2 NC_002794.1 + 49402 0.7 0.663566
Target:  5'- cGUCGgccacggcggcCGCg--GCGGCGGCGGCcGUCACg -3'
miRNA:   3'- -UAGC-----------GCGacaUGCUGUCGCCG-CAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.