miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10809 3' -57.2 NC_002794.1 + 94395 0.66 0.877808
Target:  5'- uGUCGCGC-GUGCGGgGaccGCGGUGUggggCGCg -3'
miRNA:   3'- -UAGCGCGaCAUGCUgU---CGCCGCA----GUG- -5'
10809 3' -57.2 NC_002794.1 + 64670 0.66 0.877808
Target:  5'- -cCGCGacccgacucCUGUGCGACGaCGGCGagGCg -3'
miRNA:   3'- uaGCGC---------GACAUGCUGUcGCCGCagUG- -5'
10809 3' -57.2 NC_002794.1 + 160124 0.66 0.870667
Target:  5'- gAUCGCGU----UGGgAGCGGCGUCGa -3'
miRNA:   3'- -UAGCGCGacauGCUgUCGCCGCAGUg -5'
10809 3' -57.2 NC_002794.1 + 33735 0.67 0.863318
Target:  5'- --gGUGCUGUacACGACgccGGUGGCG-CACc -3'
miRNA:   3'- uagCGCGACA--UGCUG---UCGCCGCaGUG- -5'
10809 3' -57.2 NC_002794.1 + 60462 0.67 0.863318
Target:  5'- -aCGCGCUcccGCGACugcauccGCGGCGaCACg -3'
miRNA:   3'- uaGCGCGAca-UGCUGu------CGCCGCaGUG- -5'
10809 3' -57.2 NC_002794.1 + 147920 0.67 0.855768
Target:  5'- cAUCcUGCUcaGCGACGGgGGCGUCGu -3'
miRNA:   3'- -UAGcGCGAcaUGCUGUCgCCGCAGUg -5'
10809 3' -57.2 NC_002794.1 + 113876 0.67 0.855768
Target:  5'- -gCGCGCUcgGCcGCGGCGcGCGUCGg -3'
miRNA:   3'- uaGCGCGAcaUGcUGUCGC-CGCAGUg -5'
10809 3' -57.2 NC_002794.1 + 110631 0.67 0.855768
Target:  5'- --gGCGCc--GCGGCGGCGGgGUCGg -3'
miRNA:   3'- uagCGCGacaUGCUGUCGCCgCAGUg -5'
10809 3' -57.2 NC_002794.1 + 37721 0.67 0.848021
Target:  5'- cUCGCGacccGCGAgCGGCGGCGcCGCc -3'
miRNA:   3'- uAGCGCgacaUGCU-GUCGCCGCaGUG- -5'
10809 3' -57.2 NC_002794.1 + 130526 0.67 0.848021
Target:  5'- -gCGgGCUGaccgugACGAUuuccgacGCGGCGUCGCc -3'
miRNA:   3'- uaGCgCGACa-----UGCUGu------CGCCGCAGUG- -5'
10809 3' -57.2 NC_002794.1 + 188241 0.67 0.848021
Target:  5'- cGUCGuCGaccgGCGGCGGCGGCGguaGCg -3'
miRNA:   3'- -UAGC-GCgacaUGCUGUCGCCGCag-UG- -5'
10809 3' -57.2 NC_002794.1 + 14688 0.67 0.848021
Target:  5'- gGUCGCGCUGcuccUGACGGCGuGgGgagCGCu -3'
miRNA:   3'- -UAGCGCGACau--GCUGUCGC-CgCa--GUG- -5'
10809 3' -57.2 NC_002794.1 + 110261 0.67 0.848021
Target:  5'- -cCGCGCggcGUcGCGACGGCGGC--CGCc -3'
miRNA:   3'- uaGCGCGa--CA-UGCUGUCGCCGcaGUG- -5'
10809 3' -57.2 NC_002794.1 + 115023 0.67 0.840886
Target:  5'- -cCGCGCgcccaccgucugcagGUGCGACcgGGCGGCGg-GCg -3'
miRNA:   3'- uaGCGCGa--------------CAUGCUG--UCGCCGCagUG- -5'
10809 3' -57.2 NC_002794.1 + 103593 0.67 0.840084
Target:  5'- gGUCGgGCa----GGCAGCGGCGgCACg -3'
miRNA:   3'- -UAGCgCGacaugCUGUCGCCGCaGUG- -5'
10809 3' -57.2 NC_002794.1 + 129925 0.67 0.840084
Target:  5'- uUCGCcagGCcGUgGCGACGGCGGCGgcgGCg -3'
miRNA:   3'- uAGCG---CGaCA-UGCUGUCGCCGCag-UG- -5'
10809 3' -57.2 NC_002794.1 + 32873 0.68 0.823668
Target:  5'- -gCGgGCggcgGCGGCGGCGGCGgcaUCAUg -3'
miRNA:   3'- uaGCgCGaca-UGCUGUCGCCGC---AGUG- -5'
10809 3' -57.2 NC_002794.1 + 94128 0.68 0.823668
Target:  5'- cGUCGUGUUGgaaggucCGACcGCGGCGgCGCu -3'
miRNA:   3'- -UAGCGCGACau-----GCUGuCGCCGCaGUG- -5'
10809 3' -57.2 NC_002794.1 + 186319 0.68 0.818609
Target:  5'- -gCGCGCUcGUccuccaacacgaucgACGGCGGCGGCGaCGu -3'
miRNA:   3'- uaGCGCGA-CA---------------UGCUGUCGCCGCaGUg -5'
10809 3' -57.2 NC_002794.1 + 20385 0.68 0.815203
Target:  5'- cGUCGaCGCgGUGCGGCgggaccgggAGCGGgGcCACa -3'
miRNA:   3'- -UAGC-GCGaCAUGCUG---------UCGCCgCaGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.