miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10809 3' -57.2 NC_002794.1 + 14483 0.7 0.693534
Target:  5'- -gCGCucGCUGUucGCGGCGGCGGCccgCGCu -3'
miRNA:   3'- uaGCG--CGACA--UGCUGUCGCCGca-GUG- -5'
10809 3' -57.2 NC_002794.1 + 14688 0.67 0.848021
Target:  5'- gGUCGCGCUGcuccUGACGGCGuGgGgagCGCu -3'
miRNA:   3'- -UAGCGCGACau--GCUGUCGC-CgCa--GUG- -5'
10809 3' -57.2 NC_002794.1 + 15079 0.69 0.761313
Target:  5'- -cCGCGaCUac-CGACAGCGGUGUUGCu -3'
miRNA:   3'- uaGCGC-GAcauGCUGUCGCCGCAGUG- -5'
10809 3' -57.2 NC_002794.1 + 19325 0.66 0.904208
Target:  5'- -cCGCGCUG-GCGACccGCGcGCcgGUCACc -3'
miRNA:   3'- uaGCGCGACaUGCUGu-CGC-CG--CAGUG- -5'
10809 3' -57.2 NC_002794.1 + 19487 0.69 0.751893
Target:  5'- gGUCGCccGCaccgACGACGGCGGagGUCGCg -3'
miRNA:   3'- -UAGCG--CGaca-UGCUGUCGCCg-CAGUG- -5'
10809 3' -57.2 NC_002794.1 + 20060 0.72 0.562238
Target:  5'- gAUCGCGCUGUuCGAC-GCGGUcuucaacGUCAUc -3'
miRNA:   3'- -UAGCGCGACAuGCUGuCGCCG-------CAGUG- -5'
10809 3' -57.2 NC_002794.1 + 20385 0.68 0.815203
Target:  5'- cGUCGaCGCgGUGCGGCgggaccgggAGCGGgGcCACa -3'
miRNA:   3'- -UAGC-GCGaCAUGCUG---------UCGCCgCaGUG- -5'
10809 3' -57.2 NC_002794.1 + 21920 0.72 0.573161
Target:  5'- --gGCGgaG-ACGACGGCGGCGgCGCg -3'
miRNA:   3'- uagCGCgaCaUGCUGUCGCCGCaGUG- -5'
10809 3' -57.2 NC_002794.1 + 30970 0.66 0.89794
Target:  5'- uGUCGUGacgGUccuccccgGCGACGGCGGgGUCu- -3'
miRNA:   3'- -UAGCGCga-CA--------UGCUGUCGCCgCAGug -5'
10809 3' -57.2 NC_002794.1 + 32034 0.66 0.904208
Target:  5'- --gGCGCUGc-CGAuaCAGCGGCGUguccucCACg -3'
miRNA:   3'- uagCGCGACauGCU--GUCGCCGCA------GUG- -5'
10809 3' -57.2 NC_002794.1 + 32873 0.68 0.823668
Target:  5'- -gCGgGCggcgGCGGCGGCGGCGgcaUCAUg -3'
miRNA:   3'- uaGCgCGaca-UGCUGUCGCCGC---AGUG- -5'
10809 3' -57.2 NC_002794.1 + 33735 0.67 0.863318
Target:  5'- --gGUGCUGUacACGACgccGGUGGCG-CACc -3'
miRNA:   3'- uagCGCGACA--UGCUG---UCGCCGCaGUG- -5'
10809 3' -57.2 NC_002794.1 + 36949 0.69 0.742371
Target:  5'- -cCGCGUcGcGCGGCGGCaGGCaGUCGCg -3'
miRNA:   3'- uaGCGCGaCaUGCUGUCG-CCG-CAGUG- -5'
10809 3' -57.2 NC_002794.1 + 37721 0.67 0.848021
Target:  5'- cUCGCGacccGCGAgCGGCGGCGcCGCc -3'
miRNA:   3'- uAGCGCgacaUGCU-GUCGCCGCaGUG- -5'
10809 3' -57.2 NC_002794.1 + 37893 0.71 0.64345
Target:  5'- --gGCGgUGgcgGCGGCAGCGGC-UCGCc -3'
miRNA:   3'- uagCGCgACa--UGCUGUCGCCGcAGUG- -5'
10809 3' -57.2 NC_002794.1 + 41272 0.7 0.703435
Target:  5'- cGUCGCGCUccgaGaACGGCGGCGGCuccgaCGCg -3'
miRNA:   3'- -UAGCGCGA----CaUGCUGUCGCCGca---GUG- -5'
10809 3' -57.2 NC_002794.1 + 46314 0.7 0.713278
Target:  5'- --aGCGCggcgGCGACGGCGcCGUCGCc -3'
miRNA:   3'- uagCGCGaca-UGCUGUCGCcGCAGUG- -5'
10809 3' -57.2 NC_002794.1 + 48004 0.66 0.884737
Target:  5'- -gCGUGCaguggucGUACaGCAGCuucGGCGUCACg -3'
miRNA:   3'- uaGCGCGa------CAUGcUGUCG---CCGCAGUG- -5'
10809 3' -57.2 NC_002794.1 + 49013 0.72 0.583133
Target:  5'- -cCGCGCcGcgGCGGCcGCGGCGUCGu -3'
miRNA:   3'- uaGCGCGaCa-UGCUGuCGCCGCAGUg -5'
10809 3' -57.2 NC_002794.1 + 49402 0.7 0.663566
Target:  5'- cGUCGgccacggcggcCGCg--GCGGCGGCGGCcGUCACg -3'
miRNA:   3'- -UAGC-----------GCGacaUGCUGUCGCCG-CAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.