miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10809 5' -62.5 NC_002794.1 + 187446 0.66 0.735854
Target:  5'- -cGCGCCGUC---UGCCGCCGcucGGCGu -3'
miRNA:   3'- gcCGUGGCAGcucACGGCGGCc--UCGC- -5'
10809 5' -62.5 NC_002794.1 + 145989 0.66 0.735854
Target:  5'- aGaGCGCCca-GAacgGCCGCCGGGGCc -3'
miRNA:   3'- gC-CGUGGcagCUca-CGGCGGCCUCGc -5'
10809 5' -62.5 NC_002794.1 + 189896 0.66 0.735854
Target:  5'- gGGCccGCCGUC-AGcGCCGCCGc-GCGa -3'
miRNA:   3'- gCCG--UGGCAGcUCaCGGCGGCcuCGC- -5'
10809 5' -62.5 NC_002794.1 + 49392 0.66 0.735854
Target:  5'- aGGCcgccGCCGUCGGccacgGCgGCCGcGGCGg -3'
miRNA:   3'- gCCG----UGGCAGCUca---CGgCGGCcUCGC- -5'
10809 5' -62.5 NC_002794.1 + 63482 0.66 0.735854
Target:  5'- gCGGcCGCCGUCGAcga-CGCCGcGGCGu -3'
miRNA:   3'- -GCC-GUGGCAGCUcacgGCGGCcUCGC- -5'
10809 5' -62.5 NC_002794.1 + 2609 0.66 0.734027
Target:  5'- uGGCACCuacccg-GCCGCCGGcGCGc -3'
miRNA:   3'- gCCGUGGcagcucaCGGCGGCCuCGC- -5'
10809 5' -62.5 NC_002794.1 + 194031 0.66 0.730364
Target:  5'- cCGGCgccucgcccgccgccGCCGcCGcc-GCCGCCGaGAGCGc -3'
miRNA:   3'- -GCCG---------------UGGCaGCucaCGGCGGC-CUCGC- -5'
10809 5' -62.5 NC_002794.1 + 113888 0.66 0.728528
Target:  5'- gCGGCGCgCGUCGgcgcggucugcaggaAGgccuccaggucgGCCGCCGaGGCGa -3'
miRNA:   3'- -GCCGUG-GCAGC---------------UCa-----------CGGCGGCcUCGC- -5'
10809 5' -62.5 NC_002794.1 + 58386 0.66 0.726689
Target:  5'- aGGCGCgCGggCGccaGCUGCUGGAGCa -3'
miRNA:   3'- gCCGUG-GCa-GCucaCGGCGGCCUCGc -5'
10809 5' -62.5 NC_002794.1 + 132084 0.66 0.726689
Target:  5'- cCGGUuagaacguaaccGCCGuUCGAGUGCCa-UGGGGUGg -3'
miRNA:   3'- -GCCG------------UGGC-AGCUCACGGcgGCCUCGC- -5'
10809 5' -62.5 NC_002794.1 + 137351 0.66 0.726689
Target:  5'- uCGGCGUCGUCGGG-GUCuucuucgaGCCGG-GCGa -3'
miRNA:   3'- -GCCGUGGCAGCUCaCGG--------CGGCCuCGC- -5'
10809 5' -62.5 NC_002794.1 + 56525 0.66 0.726689
Target:  5'- cCGGCGCuCGuUCcGGUcGCCauCCGGAGCGc -3'
miRNA:   3'- -GCCGUG-GC-AGcUCA-CGGc-GGCCUCGC- -5'
10809 5' -62.5 NC_002794.1 + 103646 0.66 0.717454
Target:  5'- gGGgACagGUCGAGgcagGCgUGCCGGuGCGa -3'
miRNA:   3'- gCCgUGg-CAGCUCa---CG-GCGGCCuCGC- -5'
10809 5' -62.5 NC_002794.1 + 34092 0.66 0.717454
Target:  5'- gGGCAgCCGUCGGGcGgC-CCGGAccGCGa -3'
miRNA:   3'- gCCGU-GGCAGCUCaCgGcGGCCU--CGC- -5'
10809 5' -62.5 NC_002794.1 + 50704 0.66 0.717454
Target:  5'- uCGGUcacuucGCCGccUCGcGUucGCCGcCCGGGGCGg -3'
miRNA:   3'- -GCCG------UGGC--AGCuCA--CGGC-GGCCUCGC- -5'
10809 5' -62.5 NC_002794.1 + 77784 0.66 0.717454
Target:  5'- -cGCACgGUCcaGAucGUGCaGCCGGAGCa -3'
miRNA:   3'- gcCGUGgCAG--CU--CACGgCGGCCUCGc -5'
10809 5' -62.5 NC_002794.1 + 150808 0.66 0.717454
Target:  5'- gCGGCggACgGcCGA--GCCGCUGGAGCu -3'
miRNA:   3'- -GCCG--UGgCaGCUcaCGGCGGCCUCGc -5'
10809 5' -62.5 NC_002794.1 + 102145 0.66 0.717454
Target:  5'- uCGuGCGCUucggCGGcGUGCgCGCCGGGGCc -3'
miRNA:   3'- -GC-CGUGGca--GCU-CACG-GCGGCCUCGc -5'
10809 5' -62.5 NC_002794.1 + 154326 0.66 0.717454
Target:  5'- gCGGCGucggUCGUccCGGGUGCCGCgGccGAGCu -3'
miRNA:   3'- -GCCGU----GGCA--GCUCACGGCGgC--CUCGc -5'
10809 5' -62.5 NC_002794.1 + 112241 0.66 0.716527
Target:  5'- gGGcCGCCG-CGAacGCCGCCGGcgggaccGGCGu -3'
miRNA:   3'- gCC-GUGGCaGCUcaCGGCGGCC-------UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.