miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10809 5' -62.5 NC_002794.1 + 69718 1.07 0.001602
Target:  5'- uCGGCACCGUCGAGUGCCGCCGGAGCGc -3'
miRNA:   3'- -GCCGUGGCAGCUCACGGCGGCCUCGC- -5'
10809 5' -62.5 NC_002794.1 + 142475 0.78 0.16123
Target:  5'- cCGGCACCGUgGAcgcGUGCggCGCCGGcAGCGa -3'
miRNA:   3'- -GCCGUGGCAgCU---CACG--GCGGCC-UCGC- -5'
10809 5' -62.5 NC_002794.1 + 148121 0.78 0.165099
Target:  5'- aCGGuCGgUGUCGGGcgcgggGCCGCCGGGGCGa -3'
miRNA:   3'- -GCC-GUgGCAGCUCa-----CGGCGGCCUCGC- -5'
10809 5' -62.5 NC_002794.1 + 111755 0.78 0.169051
Target:  5'- uGGCGCCG-CGcGGcGCCGUCGGGGCGg -3'
miRNA:   3'- gCCGUGGCaGC-UCaCGGCGGCCUCGC- -5'
10809 5' -62.5 NC_002794.1 + 80421 0.77 0.19915
Target:  5'- uGGCGCCGggCGGGgccGCCGCCGGcGGCc -3'
miRNA:   3'- gCCGUGGCa-GCUCa--CGGCGGCC-UCGc -5'
10809 5' -62.5 NC_002794.1 + 91570 0.74 0.281942
Target:  5'- cCGGCGCCGcugaugaacuacucCGAGUgGCCGCUGGuGCGc -3'
miRNA:   3'- -GCCGUGGCa-------------GCUCA-CGGCGGCCuCGC- -5'
10809 5' -62.5 NC_002794.1 + 187740 0.74 0.288168
Target:  5'- aCGGCACCGUCGccaucuccgaacGCCGCCGGcGCc -3'
miRNA:   3'- -GCCGUGGCAGCuca---------CGGCGGCCuCGc -5'
10809 5' -62.5 NC_002794.1 + 183851 0.74 0.298354
Target:  5'- aGGCucuCCGUCGcG-GCCGUCGGGGCc -3'
miRNA:   3'- gCCGu--GGCAGCuCaCGGCGGCCUCGc -5'
10809 5' -62.5 NC_002794.1 + 12200 0.74 0.30486
Target:  5'- gGGCGCCGcUCGGacGUGCCGgCGGcgucGGCGg -3'
miRNA:   3'- gCCGUGGC-AGCU--CACGGCgGCC----UCGC- -5'
10809 5' -62.5 NC_002794.1 + 107189 0.74 0.307493
Target:  5'- cCGGCGCCGcCGccgccggccucgcccGGcGCCGCCGG-GCGg -3'
miRNA:   3'- -GCCGUGGCaGC---------------UCaCGGCGGCCuCGC- -5'
10809 5' -62.5 NC_002794.1 + 44720 0.73 0.325031
Target:  5'- gCGGCGaCGUCGgccGGcGCCGCCGGAGgGc -3'
miRNA:   3'- -GCCGUgGCAGC---UCaCGGCGGCCUCgC- -5'
10809 5' -62.5 NC_002794.1 + 188345 0.73 0.331272
Target:  5'- gCGGCGCCGUCGcgcccguccggccGGcgGCgGCCGaGGGCGu -3'
miRNA:   3'- -GCCGUGGCAGC-------------UCa-CGgCGGC-CUCGC- -5'
10809 5' -62.5 NC_002794.1 + 44252 0.73 0.331971
Target:  5'- uCGGUGCCGggCGGcucgGCCGCCGGGGaCGg -3'
miRNA:   3'- -GCCGUGGCa-GCUca--CGGCGGCCUC-GC- -5'
10809 5' -62.5 NC_002794.1 + 44537 0.73 0.346176
Target:  5'- aGcGCGCCGUCGuc-GUCGCCGGcGGCGg -3'
miRNA:   3'- gC-CGUGGCAGCucaCGGCGGCC-UCGC- -5'
10809 5' -62.5 NC_002794.1 + 112318 0.73 0.346176
Target:  5'- uCGGCGCCGacggCGGGgaGCgCGCCGGccGGCGg -3'
miRNA:   3'- -GCCGUGGCa---GCUCa-CG-GCGGCC--UCGC- -5'
10809 5' -62.5 NC_002794.1 + 95767 0.72 0.360812
Target:  5'- gCGGCgGCCG-CGAcgGCgGCCGGGGCGa -3'
miRNA:   3'- -GCCG-UGGCaGCUcaCGgCGGCCUCGC- -5'
10809 5' -62.5 NC_002794.1 + 34837 0.72 0.360812
Target:  5'- cCGGCGCCG--GAGcgGgCGUCGGAGCGg -3'
miRNA:   3'- -GCCGUGGCagCUCa-CgGCGGCCUCGC- -5'
10809 5' -62.5 NC_002794.1 + 68747 0.72 0.375874
Target:  5'- cCGGagGCCGacUGAGccggGCCGCCGGGGCGc -3'
miRNA:   3'- -GCCg-UGGCa-GCUCa---CGGCGGCCUCGC- -5'
10809 5' -62.5 NC_002794.1 + 116895 0.72 0.383562
Target:  5'- cCGGCGCCGUCuccgGCgGCCGGuccGGCGu -3'
miRNA:   3'- -GCCGUGGCAGcucaCGgCGGCC---UCGC- -5'
10809 5' -62.5 NC_002794.1 + 137566 0.72 0.391354
Target:  5'- -cGCGCCGcCGuc-GCCGCCGGGGCc -3'
miRNA:   3'- gcCGUGGCaGCucaCGGCGGCCUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.