miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10809 5' -62.5 NC_002794.1 + 141438 0.66 0.708155
Target:  5'- gGGCGCCGg-GGGcGCCG--GGAGCGg -3'
miRNA:   3'- gCCGUGGCagCUCaCGGCggCCUCGC- -5'
10809 5' -62.5 NC_002794.1 + 92253 0.66 0.708155
Target:  5'- uCGGCGgCGUCGcuggcGGcGgCGCCGG-GCGa -3'
miRNA:   3'- -GCCGUgGCAGC-----UCaCgGCGGCCuCGC- -5'
10809 5' -62.5 NC_002794.1 + 109417 0.66 0.708155
Target:  5'- cCGGC-CCGUguacgugcacUGAGgGaCCGCCGGGGUc -3'
miRNA:   3'- -GCCGuGGCA----------GCUCaC-GGCGGCCUCGc -5'
10809 5' -62.5 NC_002794.1 + 182944 0.66 0.708155
Target:  5'- cCGGCGCCGggcUCGAGccgacgGCgGCCGGcuccucguucgAGCc -3'
miRNA:   3'- -GCCGUGGC---AGCUCa-----CGgCGGCC-----------UCGc -5'
10809 5' -62.5 NC_002794.1 + 147153 0.66 0.708155
Target:  5'- cCGGgGCCG-CGAGgGCCaGCUGGAcCGa -3'
miRNA:   3'- -GCCgUGGCaGCUCaCGG-CGGCCUcGC- -5'
10809 5' -62.5 NC_002794.1 + 142171 0.66 0.708155
Target:  5'- cCGGCAgCGUCGGcaGCgCGa-GGAGCGg -3'
miRNA:   3'- -GCCGUgGCAGCUcaCG-GCggCCUCGC- -5'
10809 5' -62.5 NC_002794.1 + 47944 0.66 0.6988
Target:  5'- uCGGCGCCG-CGcGUcccGgCGCCGGcugGGCGa -3'
miRNA:   3'- -GCCGUGGCaGCuCA---CgGCGGCC---UCGC- -5'
10809 5' -62.5 NC_002794.1 + 44346 0.66 0.6988
Target:  5'- aCGGCGCCGgcgagacCGAGaGCgCGgCGGGcGCGa -3'
miRNA:   3'- -GCCGUGGCa------GCUCaCG-GCgGCCU-CGC- -5'
10809 5' -62.5 NC_002794.1 + 21899 0.66 0.689396
Target:  5'- gCGGcCugCGUCGguGGUGgCGgCGGAGaCGa -3'
miRNA:   3'- -GCC-GugGCAGC--UCACgGCgGCCUC-GC- -5'
10809 5' -62.5 NC_002794.1 + 68549 0.66 0.689396
Target:  5'- gCGGCcgacaaGCUG-CGGGUGUCGCCGacGGCGu -3'
miRNA:   3'- -GCCG------UGGCaGCUCACGGCGGCc-UCGC- -5'
10809 5' -62.5 NC_002794.1 + 144968 0.66 0.689396
Target:  5'- uCGGCGCC-UCGAcgGUGUcgcgaccggCGCCGG-GCGu -3'
miRNA:   3'- -GCCGUGGcAGCU--CACG---------GCGGCCuCGC- -5'
10809 5' -62.5 NC_002794.1 + 150015 0.66 0.689396
Target:  5'- aCGGC-CCGcucCGAGacccgGCCGCCgaguGGAGCc -3'
miRNA:   3'- -GCCGuGGCa--GCUCa----CGGCGG----CCUCGc -5'
10809 5' -62.5 NC_002794.1 + 178251 0.66 0.689396
Target:  5'- ---gGCCGUCGAGggaagcggGCUGaCCGGAGaCGg -3'
miRNA:   3'- gccgUGGCAGCUCa-------CGGC-GGCCUC-GC- -5'
10809 5' -62.5 NC_002794.1 + 112350 0.66 0.686566
Target:  5'- nGGCGCCGgcggCGGGgcggggaGCUGCUGGAacucggcacgcaggGCGg -3'
miRNA:   3'- gCCGUGGCa---GCUCa------CGGCGGCCU--------------CGC- -5'
10809 5' -62.5 NC_002794.1 + 72894 0.66 0.685622
Target:  5'- gCGGCccuccucgccACCGUCGcgcucgccgccGCCGUCGGAGCc -3'
miRNA:   3'- -GCCG----------UGGCAGCuca--------CGGCGGCCUCGc -5'
10809 5' -62.5 NC_002794.1 + 76541 0.67 0.679951
Target:  5'- gCGGCGCCGaCGcGGUcGCgCGCCGG-GUa -3'
miRNA:   3'- -GCCGUGGCaGC-UCA-CG-GCGGCCuCGc -5'
10809 5' -62.5 NC_002794.1 + 47409 0.67 0.679951
Target:  5'- aGcCGCCGUCGGcgccGUCGCgCGGAGCGc -3'
miRNA:   3'- gCcGUGGCAGCUca--CGGCG-GCCUCGC- -5'
10809 5' -62.5 NC_002794.1 + 19494 0.67 0.679951
Target:  5'- -cGCACCGaCGAcggcggaggucGcGCCGCuCGGAGCGc -3'
miRNA:   3'- gcCGUGGCaGCU-----------CaCGGCG-GCCUCGC- -5'
10809 5' -62.5 NC_002794.1 + 101659 0.67 0.670471
Target:  5'- gCGGCGguuagcCCGUcCGAaacGCCGgCGGAGCGc -3'
miRNA:   3'- -GCCGU------GGCA-GCUca-CGGCgGCCUCGC- -5'
10809 5' -62.5 NC_002794.1 + 34718 0.67 0.670471
Target:  5'- cCGGCGCCa-CGAGgcgcggGCgGCCGcaGAGCGc -3'
miRNA:   3'- -GCCGUGGcaGCUCa-----CGgCGGC--CUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.