miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10809 5' -62.5 NC_002794.1 + 1197 0.7 0.457244
Target:  5'- cCGGCcauauaaggGCCGaUCGGG-GCC-CCGGGGCGu -3'
miRNA:   3'- -GCCG---------UGGC-AGCUCaCGGcGGCCUCGC- -5'
10809 5' -62.5 NC_002794.1 + 2609 0.66 0.734027
Target:  5'- uGGCACCuacccg-GCCGCCGGcGCGc -3'
miRNA:   3'- gCCGUGGcagcucaCGGCGGCCuCGC- -5'
10809 5' -62.5 NC_002794.1 + 12200 0.74 0.30486
Target:  5'- gGGCGCCGcUCGGacGUGCCGgCGGcgucGGCGg -3'
miRNA:   3'- gCCGUGGC-AGCU--CACGGCgGCC----UCGC- -5'
10809 5' -62.5 NC_002794.1 + 12239 0.67 0.641898
Target:  5'- gCGGCGCCGUCcgcGGcGCCGauCCGGAaCGa -3'
miRNA:   3'- -GCCGUGGCAGc--UCaCGGC--GGCCUcGC- -5'
10809 5' -62.5 NC_002794.1 + 14611 0.68 0.584739
Target:  5'- gGGCACCGcgaCGGG-GCCGgagaCGGGGCc -3'
miRNA:   3'- gCCGUGGCa--GCUCaCGGCg---GCCUCGc -5'
10809 5' -62.5 NC_002794.1 + 14754 0.69 0.52863
Target:  5'- uCGGagcccgaaGCCGUCGAG-GCCGCUGaGGCc -3'
miRNA:   3'- -GCCg-------UGGCAGCUCaCGGCGGCcUCGc -5'
10809 5' -62.5 NC_002794.1 + 19494 0.67 0.679951
Target:  5'- -cGCACCGaCGAcggcggaggucGcGCCGCuCGGAGCGc -3'
miRNA:   3'- gcCGUGGCaGCU-----------CaCGGCG-GCCUCGC- -5'
10809 5' -62.5 NC_002794.1 + 21572 0.68 0.594224
Target:  5'- uCGGguUCGUCG--UGCgCGaCCGGGGCGg -3'
miRNA:   3'- -GCCguGGCAGCucACG-GC-GGCCUCGC- -5'
10809 5' -62.5 NC_002794.1 + 21899 0.66 0.689396
Target:  5'- gCGGcCugCGUCGguGGUGgCGgCGGAGaCGa -3'
miRNA:   3'- -GCC-GugGCAGC--UCACgGCgGCCUC-GC- -5'
10809 5' -62.5 NC_002794.1 + 21941 0.71 0.423532
Target:  5'- gCGGCGCuCGUCGAagGCCGUCGGccgcucccgcGGCGc -3'
miRNA:   3'- -GCCGUG-GCAGCUcaCGGCGGCC----------UCGC- -5'
10809 5' -62.5 NC_002794.1 + 23240 0.68 0.603734
Target:  5'- gGGCguuGCCGUgCGAGccuccGCCGCCGGAa-- -3'
miRNA:   3'- gCCG---UGGCA-GCUCa----CGGCGGCCUcgc -5'
10809 5' -62.5 NC_002794.1 + 29218 0.68 0.565861
Target:  5'- uCGGCgGCCGUCG---GCCGCC-GAGCa -3'
miRNA:   3'- -GCCG-UGGCAGCucaCGGCGGcCUCGc -5'
10809 5' -62.5 NC_002794.1 + 29925 0.68 0.594224
Target:  5'- gGGCAgCGaCGAGccGCCGuCCGGgaAGCGg -3'
miRNA:   3'- gCCGUgGCaGCUCa-CGGC-GGCC--UCGC- -5'
10809 5' -62.5 NC_002794.1 + 32585 0.7 0.465895
Target:  5'- gCGGUGCCGgggcCGGG-GCCgggGCCGGGGCc -3'
miRNA:   3'- -GCCGUGGCa---GCUCaCGG---CGGCCUCGc -5'
10809 5' -62.5 NC_002794.1 + 33442 0.71 0.440204
Target:  5'- cCGGUgcaggACC-UCGGGcgGCCGCCGGAcGCGc -3'
miRNA:   3'- -GCCG-----UGGcAGCUCa-CGGCGGCCU-CGC- -5'
10809 5' -62.5 NC_002794.1 + 34092 0.66 0.717454
Target:  5'- gGGCAgCCGUCGGGcGgC-CCGGAccGCGa -3'
miRNA:   3'- gCCGU-GGCAGCUCaCgGcGGCCU--CGC- -5'
10809 5' -62.5 NC_002794.1 + 34718 0.67 0.670471
Target:  5'- cCGGCGCCa-CGAGgcgcggGCgGCCGcaGAGCGc -3'
miRNA:   3'- -GCCGUGGcaGCUCa-----CGgCGGC--CUCGC- -5'
10809 5' -62.5 NC_002794.1 + 34837 0.72 0.360812
Target:  5'- cCGGCGCCG--GAGcgGgCGUCGGAGCGg -3'
miRNA:   3'- -GCCGUGGCagCUCa-CgGCGGCCUCGC- -5'
10809 5' -62.5 NC_002794.1 + 34862 0.69 0.547146
Target:  5'- gGGCGCCG-CGGGcGCCG-CGGAcgccGCGa -3'
miRNA:   3'- gCCGUGGCaGCUCaCGGCgGCCU----CGC- -5'
10809 5' -62.5 NC_002794.1 + 35772 0.67 0.670471
Target:  5'- gCGGCACCGUCGccGGcGUCGucuCCGGcGUGa -3'
miRNA:   3'- -GCCGUGGCAGC--UCaCGGC---GGCCuCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.