miRNA display CGI


Results 1 - 20 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10810 3' -62.2 NC_002794.1 + 122679 0.66 0.715062
Target:  5'- cGGCuguGCCG-GUCGCGcCAGcGCcGGGCg -3'
miRNA:   3'- uCCG---CGGCuCGGCGCuGUC-CGuCUCG- -5'
10810 3' -62.2 NC_002794.1 + 71966 0.66 0.715062
Target:  5'- cGGCGCaucAGCCGguccCGGCGGaGCcGGAGCc -3'
miRNA:   3'- uCCGCGgc-UCGGC----GCUGUC-CG-UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 68489 0.66 0.715062
Target:  5'- gAGGCgGCCGAGCCGgcCGuGCGGGUgaucugccAGCg -3'
miRNA:   3'- -UCCG-CGGCUCGGC--GC-UGUCCGuc------UCG- -5'
10810 3' -62.2 NC_002794.1 + 150545 0.66 0.715062
Target:  5'- cGGCGCCauGGCCGUcuCGGcGCuGGAGCu -3'
miRNA:   3'- uCCGCGGc-UCGGCGcuGUC-CG-UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 181775 0.66 0.715062
Target:  5'- uGGCGCCGcgccGCCGCGucucguuCGGGCcuuGGAu- -3'
miRNA:   3'- uCCGCGGCu---CGGCGCu------GUCCG---UCUcg -5'
10810 3' -62.2 NC_002794.1 + 185266 0.66 0.715062
Target:  5'- cGGaCGCCGccggccgagugGGCCGCcgGACAGGUc-AGCa -3'
miRNA:   3'- uCC-GCGGC-----------UCGGCG--CUGUCCGucUCG- -5'
10810 3' -62.2 NC_002794.1 + 187610 0.66 0.715062
Target:  5'- cGGCGUCgcccaGAGCCGCugGAgAGGCgcaAGAGa -3'
miRNA:   3'- uCCGCGG-----CUCGGCG--CUgUCCG---UCUCg -5'
10810 3' -62.2 NC_002794.1 + 112240 0.66 0.715062
Target:  5'- aGGGcCGCCGcgaacGCCGcCGGCGGGaccGGCg -3'
miRNA:   3'- -UCC-GCGGCu----CGGC-GCUGUCCgucUCG- -5'
10810 3' -62.2 NC_002794.1 + 41843 0.66 0.715062
Target:  5'- cGGGUcgaucagcaGCCccaGGCCGC--CGGGCAGGGCc -3'
miRNA:   3'- -UCCG---------CGGc--UCGGCGcuGUCCGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 152569 0.66 0.714119
Target:  5'- cGGCGCUucaccGCCGCGGCGGccgccacgucccuGCGGcGCg -3'
miRNA:   3'- uCCGCGGcu---CGGCGCUGUC-------------CGUCuCG- -5'
10810 3' -62.2 NC_002794.1 + 19253 0.66 0.71223
Target:  5'- -uGUGCCGAccgGCCGCGGCccccguGGCgcgucuccuggccuGGAGCc -3'
miRNA:   3'- ucCGCGGCU---CGGCGCUGu-----CCG--------------UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 66958 0.66 0.705601
Target:  5'- gAGGcCGgCGAGUCGCucGCcGGgGGAGCg -3'
miRNA:   3'- -UCC-GCgGCUCGGCGc-UGuCCgUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 10650 0.66 0.705601
Target:  5'- cGGCG-CGAGCC-CGACGaGCgucuGGAGCc -3'
miRNA:   3'- uCCGCgGCUCGGcGCUGUcCG----UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 18680 0.66 0.705601
Target:  5'- cGGCuGCCGccGCCGUcuccGGCAcGGCGGcGGCg -3'
miRNA:   3'- uCCG-CGGCu-CGGCG----CUGU-CCGUC-UCG- -5'
10810 3' -62.2 NC_002794.1 + 122994 0.66 0.705601
Target:  5'- uGGUG-CGGGCCGUgcuGACGGGCc-GGCu -3'
miRNA:   3'- uCCGCgGCUCGGCG---CUGUCCGucUCG- -5'
10810 3' -62.2 NC_002794.1 + 111317 0.66 0.705601
Target:  5'- gAGaCGCCGGGCCaGCGGCgcGGGCc--GCa -3'
miRNA:   3'- -UCcGCGGCUCGG-CGCUG--UCCGucuCG- -5'
10810 3' -62.2 NC_002794.1 + 99787 0.66 0.705601
Target:  5'- cGGCGUcgacuaCGAGCgCGCGccGCGGGCGccGGCg -3'
miRNA:   3'- uCCGCG------GCUCG-GCGC--UGUCCGUc-UCG- -5'
10810 3' -62.2 NC_002794.1 + 190354 0.66 0.705601
Target:  5'- cAGGuCGUCG-GCCGCG-CGGcGCAGcgGGUg -3'
miRNA:   3'- -UCC-GCGGCuCGGCGCuGUC-CGUC--UCG- -5'
10810 3' -62.2 NC_002794.1 + 192238 0.66 0.705601
Target:  5'- cGGCGCUGccGUCGcCGACGGcGCGGuucGCu -3'
miRNA:   3'- uCCGCGGCu-CGGC-GCUGUC-CGUCu--CG- -5'
10810 3' -62.2 NC_002794.1 + 36263 0.66 0.705601
Target:  5'- uGGCGUCGuguaacGCCGCGucccgcgacuGCGGGUgcacGAGCu -3'
miRNA:   3'- uCCGCGGCu-----CGGCGC----------UGUCCGu---CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.