miRNA display CGI


Results 61 - 80 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10810 3' -62.2 NC_002794.1 + 124141 0.66 0.696084
Target:  5'- cGGCGcCCGGGagcggucuCCGCGGggccCGGG-AGAGCg -3'
miRNA:   3'- uCCGC-GGCUC--------GGCGCU----GUCCgUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 32314 0.66 0.696084
Target:  5'- -cGCGCCG-GCCGCGGCcGG-AGAcaaGCc -3'
miRNA:   3'- ucCGCGGCuCGGCGCUGuCCgUCU---CG- -5'
10810 3' -62.2 NC_002794.1 + 59378 0.66 0.696084
Target:  5'- cGGCGCCGcGCCuGCuGCGGGCcuacGCc -3'
miRNA:   3'- uCCGCGGCuCGG-CGcUGUCCGucu-CG- -5'
10810 3' -62.2 NC_002794.1 + 78311 0.66 0.696084
Target:  5'- uGGCucucGCCcucucccGgCGCGACGGGCGGAGg -3'
miRNA:   3'- uCCG----CGGcu-----CgGCGCUGUCCGUCUCg -5'
10810 3' -62.2 NC_002794.1 + 96433 0.66 0.696084
Target:  5'- cGGCGCucgaucucaaCGAGCUGCaGAaAGGCuucuGGGCu -3'
miRNA:   3'- uCCGCG----------GCUCGGCG-CUgUCCGu---CUCG- -5'
10810 3' -62.2 NC_002794.1 + 18680 0.66 0.705601
Target:  5'- cGGCuGCCGccGCCGUcuccGGCAcGGCGGcGGCg -3'
miRNA:   3'- uCCG-CGGCu-CGGCG----CUGU-CCGUC-UCG- -5'
10810 3' -62.2 NC_002794.1 + 36263 0.66 0.705601
Target:  5'- uGGCGUCGuguaacGCCGCGucccgcgacuGCGGGUgcacGAGCu -3'
miRNA:   3'- uCCGCGGCu-----CGGCGC----------UGUCCGu---CUCG- -5'
10810 3' -62.2 NC_002794.1 + 185474 0.66 0.696084
Target:  5'- cGGGCGgCG-GCCGCGGCgAGG-GGAccGCc -3'
miRNA:   3'- -UCCGCgGCuCGGCGCUG-UCCgUCU--CG- -5'
10810 3' -62.2 NC_002794.1 + 54035 0.66 0.7018
Target:  5'- uGGGCGUC-AGCUGCGACccgucgacguggcGGCAGAu- -3'
miRNA:   3'- -UCCGCGGcUCGGCGCUGu------------CCGUCUcg -5'
10810 3' -62.2 NC_002794.1 + 184954 0.66 0.696084
Target:  5'- -uGCGCCGgcccgcgcAGCCGCucguCGGGCAGcacgcAGCg -3'
miRNA:   3'- ucCGCGGC--------UCGGCGcu--GUCCGUC-----UCG- -5'
10810 3' -62.2 NC_002794.1 + 135745 0.66 0.696084
Target:  5'- -cGCGCCGcGCCcuCGAggauCAGGCGGuGCu -3'
miRNA:   3'- ucCGCGGCuCGGc-GCU----GUCCGUCuCG- -5'
10810 3' -62.2 NC_002794.1 + 81517 0.66 0.696084
Target:  5'- --cUGCCGAGCCuacuGCGACAcGCGcucGAGCg -3'
miRNA:   3'- uccGCGGCUCGG----CGCUGUcCGU---CUCG- -5'
10810 3' -62.2 NC_002794.1 + 181277 0.67 0.64793
Target:  5'- ---aGCCGAgguacGCCGCGAacaccaccccCAGGCcGAGCa -3'
miRNA:   3'- uccgCGGCU-----CGGCGCU----------GUCCGuCUCG- -5'
10810 3' -62.2 NC_002794.1 + 88071 0.67 0.655677
Target:  5'- aGGGgGCgGGGCCGCGGUuugaacgGGGCGuggugauGAGCu -3'
miRNA:   3'- -UCCgCGgCUCGGCGCUG-------UCCGU-------CUCG- -5'
10810 3' -62.2 NC_002794.1 + 94208 0.67 0.657612
Target:  5'- -uGCGCUugugacgguGGCgGCGACGGGCGG-GCg -3'
miRNA:   3'- ucCGCGGc--------UCGgCGCUGUCCGUCuCG- -5'
10810 3' -62.2 NC_002794.1 + 128576 0.67 0.656645
Target:  5'- cGGCGUCGuGUacacguuCGCGACccugAGGCggcaGGAGCg -3'
miRNA:   3'- uCCGCGGCuCG-------GCGCUG----UCCG----UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 140014 0.67 0.657612
Target:  5'- gAGGcCGCgGAgGCCGCGGCccccgcGGGCGGcGGg -3'
miRNA:   3'- -UCC-GCGgCU-CGGCGCUG------UCCGUC-UCg -5'
10810 3' -62.2 NC_002794.1 + 47945 0.67 0.657612
Target:  5'- cGGCGCCGcgcGUCcCGGCGccGGCuGGGCg -3'
miRNA:   3'- uCCGCGGCu--CGGcGCUGU--CCGuCUCG- -5'
10810 3' -62.2 NC_002794.1 + 189867 0.67 0.657612
Target:  5'- cGGCGUCGucGCCGcCGACcGGCccgcucGGGCc -3'
miRNA:   3'- uCCGCGGCu-CGGC-GCUGuCCGu-----CUCG- -5'
10810 3' -62.2 NC_002794.1 + 100818 0.67 0.64793
Target:  5'- -cGUGCCGGGCgGCGgggGCcGGCAGccgGGCu -3'
miRNA:   3'- ucCGCGGCUCGgCGC---UGuCCGUC---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.