Results 21 - 40 of 339 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10810 | 3' | -62.2 | NC_002794.1 | + | 112335 | 0.76 | 0.19318 |
Target: 5'- gAGcGCGCCG-GCCgGCGGCGccggcGGCGGGGCg -3' miRNA: 3'- -UC-CGCGGCuCGG-CGCUGU-----CCGUCUCG- -5' |
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10810 | 3' | -62.2 | NC_002794.1 | + | 94011 | 0.76 | 0.207308 |
Target: 5'- cGGCGgCGGGCCGgcggguuccgcCGGCGGGCccgAGAGCg -3' miRNA: 3'- uCCGCgGCUCGGC-----------GCUGUCCG---UCUCG- -5' |
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10810 | 3' | -62.2 | NC_002794.1 | + | 101574 | 0.75 | 0.222319 |
Target: 5'- gGGaGUGCCGGccGCCGCGGCcGGgGGGGCg -3' miRNA: 3'- -UC-CGCGGCU--CGGCGCUGuCCgUCUCG- -5' |
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10810 | 3' | -62.2 | NC_002794.1 | + | 107064 | 0.75 | 0.246 |
Target: 5'- cGGGCGCgGcGCCGCcggcaugucggagccGACGGGCGGGGg -3' miRNA: 3'- -UCCGCGgCuCGGCG---------------CUGUCCGUCUCg -5' |
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10810 | 3' | -62.2 | NC_002794.1 | + | 141648 | 0.75 | 0.243764 |
Target: 5'- cGGCgugGCCGcGGCCGcCGGCGGGUcGAGCg -3' miRNA: 3'- uCCG---CGGC-UCGGC-GCUGUCCGuCUCG- -5' |
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10810 | 3' | -62.2 | NC_002794.1 | + | 183664 | 0.75 | 0.232834 |
Target: 5'- -cGCGCCGGGCCcgagcgcCGACGGGUcGAGCg -3' miRNA: 3'- ucCGCGGCUCGGc------GCUGUCCGuCUCG- -5' |
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10810 | 3' | -62.2 | NC_002794.1 | + | 150090 | 0.75 | 0.249387 |
Target: 5'- -uGCGCUGGGCggaGCGugAGGCcGGAGCg -3' miRNA: 3'- ucCGCGGCUCGg--CGCugUCCG-UCUCG- -5' |
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10810 | 3' | -62.2 | NC_002794.1 | + | 36950 | 0.75 | 0.249387 |
Target: 5'- -cGCGUCGcGCgGCGGCAGGCAGucGCg -3' miRNA: 3'- ucCGCGGCuCGgCGCUGUCCGUCu-CG- -5' |
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10810 | 3' | -62.2 | NC_002794.1 | + | 86904 | 0.75 | 0.24882 |
Target: 5'- gGGGcCGCCGAcccggugacgcccGUgGCgGGCAGGCGGGGCg -3' miRNA: 3'- -UCC-GCGGCU-------------CGgCG-CUGUCCGUCUCG- -5' |
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10810 | 3' | -62.2 | NC_002794.1 | + | 34719 | 0.75 | 0.232834 |
Target: 5'- cGGCGCCacGAGgCGCgGGCGGccGCAGAGCg -3' miRNA: 3'- uCCGCGG--CUCgGCG-CUGUC--CGUCUCG- -5' |
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10810 | 3' | -62.2 | NC_002794.1 | + | 143279 | 0.75 | 0.227525 |
Target: 5'- cGGCGCCG-GCCGCucgggguCGGGCGGGuGCa -3' miRNA: 3'- uCCGCGGCuCGGCGcu-----GUCCGUCU-CG- -5' |
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10810 | 3' | -62.2 | NC_002794.1 | + | 32586 | 0.74 | 0.272955 |
Target: 5'- cGGUGCCgGGGCCGgGGCcgGGGcCGGGGCc -3' miRNA: 3'- uCCGCGG-CUCGGCgCUG--UCC-GUCUCG- -5' |
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10810 | 3' | -62.2 | NC_002794.1 | + | 115334 | 0.74 | 0.272955 |
Target: 5'- cGGCGuCCGGGCCGCucggcacgucCAGGCgacAGAGCg -3' miRNA: 3'- uCCGC-GGCUCGGCGcu--------GUCCG---UCUCG- -5' |
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10810 | 3' | -62.2 | NC_002794.1 | + | 44113 | 0.74 | 0.255117 |
Target: 5'- cGaGCGCCGcaucAGCuCGCGGCAGuGUAGGGCc -3' miRNA: 3'- uC-CGCGGC----UCG-GCGCUGUC-CGUCUCG- -5' |
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10810 | 3' | -62.2 | NC_002794.1 | + | 107152 | 0.74 | 0.260954 |
Target: 5'- cGGCGCCcccggcgaGGGCCGCcGCuacgcGGCGGAGCc -3' miRNA: 3'- uCCGCGG--------CUCGGCGcUGu----CCGUCUCG- -5' |
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10810 | 3' | -62.2 | NC_002794.1 | + | 83032 | 0.74 | 0.272955 |
Target: 5'- cGGCGCCGGGCgGCaccCAcGGCGGAGg -3' miRNA: 3'- uCCGCGGCUCGgCGcu-GU-CCGUCUCg -5' |
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10810 | 3' | -62.2 | NC_002794.1 | + | 141446 | 0.74 | 0.285394 |
Target: 5'- gGGGCGCCGGGa-GCGGCGcGGCGuccggacuggcGAGCa -3' miRNA: 3'- -UCCGCGGCUCggCGCUGU-CCGU-----------CUCG- -5' |
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10810 | 3' | -62.2 | NC_002794.1 | + | 51366 | 0.74 | 0.285394 |
Target: 5'- gAGGCgGCCGccccguccGGCCgGCGACAGGCGcccuccGGGCu -3' miRNA: 3'- -UCCG-CGGC--------UCGG-CGCUGUCCGU------CUCG- -5' |
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10810 | 3' | -62.2 | NC_002794.1 | + | 56322 | 0.74 | 0.2669 |
Target: 5'- uGGCgGCCGuGGCCgGCGACGcGGCgaAGAGCa -3' miRNA: 3'- uCCG-CGGC-UCGG-CGCUGU-CCG--UCUCG- -5' |
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10810 | 3' | -62.2 | NC_002794.1 | + | 107215 | 0.74 | 0.2669 |
Target: 5'- cGGCGCCGccgggcGGCgCGCGACGGGgGcGGCg -3' miRNA: 3'- uCCGCGGC------UCG-GCGCUGUCCgUcUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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