miRNA display CGI


Results 1 - 20 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10810 3' -62.2 NC_002794.1 + 69411 1.11 0.000741
Target:  5'- cAGGCGCCGAGCCGCGACAGGCAGAGCg -3'
miRNA:   3'- -UCCGCGGCUCGGCGCUGUCCGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 119934 0.81 0.102517
Target:  5'- cGGCGCCGAucuccaGCCGCGccaGCAGGUcGAGCg -3'
miRNA:   3'- uCCGCGGCU------CGGCGC---UGUCCGuCUCG- -5'
10810 3' -62.2 NC_002794.1 + 122907 0.81 0.102517
Target:  5'- cGGGCGCCGAGuUCGCGACGGuGUacgugcagaaGGAGCg -3'
miRNA:   3'- -UCCGCGGCUC-GGCGCUGUC-CG----------UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 66843 0.8 0.108835
Target:  5'- cGGGCGCCGccgucggcgcggcgaGGCCGCGGCGugcGGCuGAGCc -3'
miRNA:   3'- -UCCGCGGC---------------UCGGCGCUGU---CCGuCUCG- -5'
10810 3' -62.2 NC_002794.1 + 118949 0.8 0.113248
Target:  5'- gGGGUGCaggaaGAGCCGCGugAcggucagguGGCGGAGCa -3'
miRNA:   3'- -UCCGCGg----CUCGGCGCugU---------CCGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 56186 0.79 0.1241
Target:  5'- uAGaGCaCCGGGCCGCGGCAGGCGuaggcgccccgcauGAGCa -3'
miRNA:   3'- -UC-CGcGGCUCGGCGCUGUCCGU--------------CUCG- -5'
10810 3' -62.2 NC_002794.1 + 138758 0.79 0.131325
Target:  5'- cGGGgGCCGAGUCGCGGCGgucGGUGGAGg -3'
miRNA:   3'- -UCCgCGGCUCGGCGCUGU---CCGUCUCg -5'
10810 3' -62.2 NC_002794.1 + 55301 0.79 0.134585
Target:  5'- cGGCGgCGGcGUCGCGGCGGGCGcGGGCg -3'
miRNA:   3'- uCCGCgGCU-CGGCGCUGUCCGU-CUCG- -5'
10810 3' -62.2 NC_002794.1 + 114004 0.79 0.134585
Target:  5'- gAGGCGCCgGAGgaGCGACucguacAGGCGGGGCa -3'
miRNA:   3'- -UCCGCGG-CUCggCGCUG------UCCGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 92272 0.79 0.136912
Target:  5'- cGGCGCCGGGCgaggcgcgcaagguCgGCGACgAGGCGGGGCu -3'
miRNA:   3'- uCCGCGGCUCG--------------G-CGCUG-UCCGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 111422 0.78 0.144819
Target:  5'- uAGGCGCgGAGCCGCcagaucGGCAGuCGGGGCg -3'
miRNA:   3'- -UCCGCGgCUCGGCG------CUGUCcGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 95764 0.77 0.167441
Target:  5'- gGGGCGgCG-GCCGCGACGgcGGcCGGGGCg -3'
miRNA:   3'- -UCCGCgGCuCGGCGCUGU--CC-GUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 101274 0.77 0.173157
Target:  5'- cGGCGCCGguGGCgGCGGCGGGgaggagacgacguacCAGGGCg -3'
miRNA:   3'- uCCGCGGC--UCGgCGCUGUCC---------------GUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 106342 0.77 0.188661
Target:  5'- cGGUucGCCGGGUCGaCGGCGGGCGG-GCg -3'
miRNA:   3'- uCCG--CGGCUCGGC-GCUGUCCGUCuCG- -5'
10810 3' -62.2 NC_002794.1 + 183562 0.76 0.192724
Target:  5'- -cGCGCCGAGCCGcCGACacGGGCcuuuaauacggugGGGGCg -3'
miRNA:   3'- ucCGCGGCUCGGC-GCUG--UCCG-------------UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 112335 0.76 0.19318
Target:  5'- gAGcGCGCCG-GCCgGCGGCGccggcGGCGGGGCg -3'
miRNA:   3'- -UC-CGCGGCuCGG-CGCUGU-----CCGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 148132 0.76 0.19318
Target:  5'- cGGGCGCgGGGCCGCcg-GGGCgAGGGCg -3'
miRNA:   3'- -UCCGCGgCUCGGCGcugUCCG-UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 37739 0.76 0.202502
Target:  5'- cGGCGCCGccGGCgGCGGCGcGGCGGcGCc -3'
miRNA:   3'- uCCGCGGC--UCGgCGCUGU-CCGUCuCG- -5'
10810 3' -62.2 NC_002794.1 + 94011 0.76 0.207308
Target:  5'- cGGCGgCGGGCCGgcggguuccgcCGGCGGGCccgAGAGCg -3'
miRNA:   3'- uCCGCgGCUCGGC-----------GCUGUCCG---UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 49220 0.76 0.217215
Target:  5'- gAGGCGCCGcgccgccaacagGGCCGuCGACGGGCGcccGCg -3'
miRNA:   3'- -UCCGCGGC------------UCGGC-GCUGUCCGUcu-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.