miRNA display CGI


Results 21 - 40 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10810 3' -62.2 NC_002794.1 + 49220 0.76 0.217215
Target:  5'- gAGGCGCCGcgccgccaacagGGCCGuCGACGGGCGcccGCg -3'
miRNA:   3'- -UCCGCGGC------------UCGGC-GCUGUCCGUcu-CG- -5'
10810 3' -62.2 NC_002794.1 + 14602 0.76 0.217215
Target:  5'- gAGcGCGCCGGGCacCGCGACGGGgccggagaCGGGGCc -3'
miRNA:   3'- -UC-CGCGGCUCG--GCGCUGUCC--------GUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 101574 0.75 0.222319
Target:  5'- gGGaGUGCCGGccGCCGCGGCcGGgGGGGCg -3'
miRNA:   3'- -UC-CGCGGCU--CGGCGCUGuCCgUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 143279 0.75 0.227525
Target:  5'- cGGCGCCG-GCCGCucgggguCGGGCGGGuGCa -3'
miRNA:   3'- uCCGCGGCuCGGCGcu-----GUCCGUCU-CG- -5'
10810 3' -62.2 NC_002794.1 + 183664 0.75 0.232834
Target:  5'- -cGCGCCGGGCCcgagcgcCGACGGGUcGAGCg -3'
miRNA:   3'- ucCGCGGCUCGGc------GCUGUCCGuCUCG- -5'
10810 3' -62.2 NC_002794.1 + 34719 0.75 0.232834
Target:  5'- cGGCGCCacGAGgCGCgGGCGGccGCAGAGCg -3'
miRNA:   3'- uCCGCGG--CUCgGCG-CUGUC--CGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 141648 0.75 0.243764
Target:  5'- cGGCgugGCCGcGGCCGcCGGCGGGUcGAGCg -3'
miRNA:   3'- uCCG---CGGC-UCGGC-GCUGUCCGuCUCG- -5'
10810 3' -62.2 NC_002794.1 + 107064 0.75 0.246
Target:  5'- cGGGCGCgGcGCCGCcggcaugucggagccGACGGGCGGGGg -3'
miRNA:   3'- -UCCGCGgCuCGGCG---------------CUGUCCGUCUCg -5'
10810 3' -62.2 NC_002794.1 + 86904 0.75 0.24882
Target:  5'- gGGGcCGCCGAcccggugacgcccGUgGCgGGCAGGCGGGGCg -3'
miRNA:   3'- -UCC-GCGGCU-------------CGgCG-CUGUCCGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 150090 0.75 0.249387
Target:  5'- -uGCGCUGGGCggaGCGugAGGCcGGAGCg -3'
miRNA:   3'- ucCGCGGCUCGg--CGCugUCCG-UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 36950 0.75 0.249387
Target:  5'- -cGCGUCGcGCgGCGGCAGGCAGucGCg -3'
miRNA:   3'- ucCGCGGCuCGgCGCUGUCCGUCu-CG- -5'
10810 3' -62.2 NC_002794.1 + 104902 0.74 0.255117
Target:  5'- gAGGCGCCGuGCUGCucgaGCAGGCGccGCg -3'
miRNA:   3'- -UCCGCGGCuCGGCGc---UGUCCGUcuCG- -5'
10810 3' -62.2 NC_002794.1 + 44113 0.74 0.255117
Target:  5'- cGaGCGCCGcaucAGCuCGCGGCAGuGUAGGGCc -3'
miRNA:   3'- uC-CGCGGC----UCG-GCGCUGUC-CGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 107152 0.74 0.260954
Target:  5'- cGGCGCCcccggcgaGGGCCGCcGCuacgcGGCGGAGCc -3'
miRNA:   3'- uCCGCGG--------CUCGGCGcUGu----CCGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 56322 0.74 0.2669
Target:  5'- uGGCgGCCGuGGCCgGCGACGcGGCgaAGAGCa -3'
miRNA:   3'- uCCG-CGGC-UCGG-CGCUGU-CCG--UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 107215 0.74 0.2669
Target:  5'- cGGCGCCGccgggcGGCgCGCGACGGGgGcGGCg -3'
miRNA:   3'- uCCGCGGC------UCG-GCGCUGUCCgUcUCG- -5'
10810 3' -62.2 NC_002794.1 + 32586 0.74 0.272955
Target:  5'- cGGUGCCgGGGCCGgGGCcgGGGcCGGGGCc -3'
miRNA:   3'- uCCGCGG-CUCGGCgCUG--UCC-GUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 115334 0.74 0.272955
Target:  5'- cGGCGuCCGGGCCGCucggcacgucCAGGCgacAGAGCg -3'
miRNA:   3'- uCCGC-GGCUCGGCGcu--------GUCCG---UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 83032 0.74 0.272955
Target:  5'- cGGCGCCGGGCgGCaccCAcGGCGGAGg -3'
miRNA:   3'- uCCGCGGCUCGgCGcu-GU-CCGUCUCg -5'
10810 3' -62.2 NC_002794.1 + 141446 0.74 0.285394
Target:  5'- gGGGCGCCGGGa-GCGGCGcGGCGuccggacuggcGAGCa -3'
miRNA:   3'- -UCCGCGGCUCggCGCUGU-CCGU-----------CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.