miRNA display CGI


Results 41 - 60 of 339 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10810 3' -62.2 NC_002794.1 + 141446 0.74 0.285394
Target:  5'- gGGGCGCCGGGa-GCGGCGcGGCGuccggacuggcGAGCa -3'
miRNA:   3'- -UCCGCGGCUCggCGCUGU-CCGU-----------CUCG- -5'
10810 3' -62.2 NC_002794.1 + 145333 0.73 0.29178
Target:  5'- cGGCGCuCGGGCC-CGAgCGGGCccGAGCu -3'
miRNA:   3'- uCCGCG-GCUCGGcGCU-GUCCGu-CUCG- -5'
10810 3' -62.2 NC_002794.1 + 181473 0.73 0.29178
Target:  5'- -cGCGCCGAGUCGC--CAGGCAgacGAGCc -3'
miRNA:   3'- ucCGCGGCUCGGCGcuGUCCGU---CUCG- -5'
10810 3' -62.2 NC_002794.1 + 56272 0.73 0.29178
Target:  5'- cGG-GCCGAGCaGCaGGC-GGCAGAGCa -3'
miRNA:   3'- uCCgCGGCUCGgCG-CUGuCCGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 142494 0.73 0.304885
Target:  5'- cGGCGCCG-GCaGCGACGuGGCGGAa- -3'
miRNA:   3'- uCCGCGGCuCGgCGCUGU-CCGUCUcg -5'
10810 3' -62.2 NC_002794.1 + 11536 0.73 0.310928
Target:  5'- cGGGCGaCCGAGgaCCGCGGCuGGUcgcuagaaugucaGGGGCa -3'
miRNA:   3'- -UCCGC-GGCUC--GGCGCUGuCCG-------------UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 32856 0.73 0.318437
Target:  5'- cGGCagcgGCCGAGCCG--GCGGGCGGcGGCg -3'
miRNA:   3'- uCCG----CGGCUCGGCgcUGUCCGUC-UCG- -5'
10810 3' -62.2 NC_002794.1 + 61887 0.73 0.318437
Target:  5'- cGGCGCCGcGCgGCGAgCGcGGC-GAGCg -3'
miRNA:   3'- uCCGCGGCuCGgCGCU-GU-CCGuCUCG- -5'
10810 3' -62.2 NC_002794.1 + 187480 0.73 0.318437
Target:  5'- -cGCGCCGggccgaggacgaGGCCGCG-CAGGCggccAGGGCg -3'
miRNA:   3'- ucCGCGGC------------UCGGCGCuGUCCG----UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 101603 0.73 0.318437
Target:  5'- cGGGUGCCG-GCC-CGcCGGGCGGGGg -3'
miRNA:   3'- -UCCGCGGCuCGGcGCuGUCCGUCUCg -5'
10810 3' -62.2 NC_002794.1 + 110621 0.73 0.318437
Target:  5'- cGGGaGCCGcggcGCCGCGGC-GGCGGGGUc -3'
miRNA:   3'- -UCCgCGGCu---CGGCGCUGuCCGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 103563 0.73 0.321201
Target:  5'- uGGCGuCCGAcGCCGUGGCcgacgagcagcggucGGGCAG-GCa -3'
miRNA:   3'- uCCGC-GGCU-CGGCGCUG---------------UCCGUCuCG- -5'
10810 3' -62.2 NC_002794.1 + 189001 0.73 0.325381
Target:  5'- cGGCaGCUcuccaGGUCGCGACAGGCcaGGAGCc -3'
miRNA:   3'- uCCG-CGGc----UCGGCGCUGUCCG--UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 38460 0.73 0.325381
Target:  5'- cGGCGC--GGCCGCGGCgcgcccuuuauGGGCGGAGg -3'
miRNA:   3'- uCCGCGgcUCGGCGCUG-----------UCCGUCUCg -5'
10810 3' -62.2 NC_002794.1 + 53298 0.72 0.332437
Target:  5'- cAGGUGCCGAGCgGuCGGCcGGCGccGCg -3'
miRNA:   3'- -UCCGCGGCUCGgC-GCUGuCCGUcuCG- -5'
10810 3' -62.2 NC_002794.1 + 52645 0.72 0.332437
Target:  5'- cGGGaGCCgGAGCgGCGGCAGGCucuGCg -3'
miRNA:   3'- -UCCgCGG-CUCGgCGCUGUCCGucuCG- -5'
10810 3' -62.2 NC_002794.1 + 181560 0.72 0.332437
Target:  5'- cGGuCGCCGGGCCaaucaggauCGACAGGCugcGGGCc -3'
miRNA:   3'- uCC-GCGGCUCGGc--------GCUGUCCGu--CUCG- -5'
10810 3' -62.2 NC_002794.1 + 117201 0.72 0.332437
Target:  5'- cGGCGUCGGGCCcggGCGGCuccGGCcgcgucAGGGCg -3'
miRNA:   3'- uCCGCGGCUCGG---CGCUGu--CCG------UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 179988 0.72 0.332437
Target:  5'- aAGGCGgUG-GCCGCGAC-GGCGG-GCc -3'
miRNA:   3'- -UCCGCgGCuCGGCGCUGuCCGUCuCG- -5'
10810 3' -62.2 NC_002794.1 + 49391 0.72 0.337443
Target:  5'- cAGGcCGCCGccgucggccacggcGGCCGCGGC-GGCGGcGGCc -3'
miRNA:   3'- -UCC-GCGGC--------------UCGGCGCUGuCCGUC-UCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.