miRNA display CGI


Results 61 - 80 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10810 3' -62.2 NC_002794.1 + 126613 0.72 0.339605
Target:  5'- cGGCGCCGAcGUCGCGGCGuGaGCGcgaccGGGCg -3'
miRNA:   3'- uCCGCGGCU-CGGCGCUGU-C-CGU-----CUCG- -5'
10810 3' -62.2 NC_002794.1 + 84264 0.72 0.346151
Target:  5'- cGGCGCCGAuucccauuccgcaGCUGcCGACGGGgAGcGGCg -3'
miRNA:   3'- uCCGCGGCU-------------CGGC-GCUGUCCgUC-UCG- -5'
10810 3' -62.2 NC_002794.1 + 175704 0.72 0.346884
Target:  5'- uGGCGCCGgucAGaUCGCcACAGGCgaGGAGCg -3'
miRNA:   3'- uCCGCGGC---UC-GGCGcUGUCCG--UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 112741 0.72 0.346884
Target:  5'- aAGGCGCgGugcuCCGCGGC-GGCGGGGUc -3'
miRNA:   3'- -UCCGCGgCuc--GGCGCUGuCCGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 55168 0.72 0.346884
Target:  5'- cGaGCGCCGAGCgGgCGACucgAGGCGGcGGCc -3'
miRNA:   3'- uC-CGCGGCUCGgC-GCUG---UCCGUC-UCG- -5'
10810 3' -62.2 NC_002794.1 + 192960 0.72 0.346884
Target:  5'- cAGGCcgaCGAGCCGUG-CAGGacCAGGGCg -3'
miRNA:   3'- -UCCGcg-GCUCGGCGCuGUCC--GUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 117632 0.72 0.354274
Target:  5'- aGGGCGCCGAcCgCGCGGCcccGGacgaAGAGCg -3'
miRNA:   3'- -UCCGCGGCUcG-GCGCUGu--CCg---UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 188346 0.72 0.354274
Target:  5'- cGGCGCCGucgcgcccguccGGCCgGCGGC-GGCcgAGGGCg -3'
miRNA:   3'- uCCGCGGC------------UCGG-CGCUGuCCG--UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 111755 0.72 0.354274
Target:  5'- uGGCGCCGcgcggcGCCGUcggGGCGGGCucguucgucaGGAGCg -3'
miRNA:   3'- uCCGCGGCu-----CGGCG---CUGUCCG----------UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 182945 0.72 0.354274
Target:  5'- cGGCGCCGGGCuCGagcCGAC-GGCGGccGGCu -3'
miRNA:   3'- uCCGCGGCUCG-GC---GCUGuCCGUC--UCG- -5'
10810 3' -62.2 NC_002794.1 + 118301 0.72 0.361019
Target:  5'- cGGGCGCgucgcucgucguCGucGUCGCGACGGGCggcgagaAGAGCa -3'
miRNA:   3'- -UCCGCG------------GCu-CGGCGCUGUCCG-------UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 113166 0.72 0.361774
Target:  5'- uAGcGCGCgCGGGCgGCGGCGGucGCGGAGg -3'
miRNA:   3'- -UC-CGCG-GCUCGgCGCUGUC--CGUCUCg -5'
10810 3' -62.2 NC_002794.1 + 108159 0.72 0.361774
Target:  5'- gGGaGCGCCGGcgcgaagacGCCGCGACGcGCGGAcuGCg -3'
miRNA:   3'- -UC-CGCGGCU---------CGGCGCUGUcCGUCU--CG- -5'
10810 3' -62.2 NC_002794.1 + 137648 0.72 0.361774
Target:  5'- cGGGCGCCGGGCCucCGGCgccgcuGGuGCGGAcGCa -3'
miRNA:   3'- -UCCGCGGCUCGGc-GCUG------UC-CGUCU-CG- -5'
10810 3' -62.2 NC_002794.1 + 36916 0.72 0.361774
Target:  5'- cGGCGCCGGccCCGCGACc-GCGGAGg -3'
miRNA:   3'- uCCGCGGCUc-GGCGCUGucCGUCUCg -5'
10810 3' -62.2 NC_002794.1 + 145921 0.72 0.361774
Target:  5'- -cGCGCCGAGCggaGgGGCcGGCgAGAGCg -3'
miRNA:   3'- ucCGCGGCUCGg--CgCUGuCCG-UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 86019 0.72 0.369384
Target:  5'- uGGCGCCGAccguGCgGCgGACAGGCcucaucGGGCc -3'
miRNA:   3'- uCCGCGGCU----CGgCG-CUGUCCGu-----CUCG- -5'
10810 3' -62.2 NC_002794.1 + 182221 0.72 0.376326
Target:  5'- gGGGCuCCGAcggucagGCCGCaGCAGGCcaggaGGAGCg -3'
miRNA:   3'- -UCCGcGGCU-------CGGCGcUGUCCG-----UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 51256 0.72 0.377103
Target:  5'- aAGGCGUgggggCGGGCCGggaGGCAGGCGcGGCc -3'
miRNA:   3'- -UCCGCG-----GCUCGGCg--CUGUCCGUcUCG- -5'
10810 3' -62.2 NC_002794.1 + 115617 0.72 0.377103
Target:  5'- cGGCGCCGGGagGCGGguCAGGUgguucAGGGCg -3'
miRNA:   3'- uCCGCGGCUCggCGCU--GUCCG-----UCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.