miRNA display CGI


Results 21 - 40 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10810 3' -62.2 NC_002794.1 + 113873 0.66 0.705601
Target:  5'- cAGGCGCgcucGGCCGCGGCGcGCGucGGCg -3'
miRNA:   3'- -UCCGCGgc--UCGGCGCUGUcCGUc-UCG- -5'
10810 3' -62.2 NC_002794.1 + 54035 0.66 0.7018
Target:  5'- uGGGCGUC-AGCUGCGACccgucgacguggcGGCAGAu- -3'
miRNA:   3'- -UCCGCGGcUCGGCGCUGu------------CCGUCUcg -5'
10810 3' -62.2 NC_002794.1 + 32314 0.66 0.696084
Target:  5'- -cGCGCCG-GCCGCGGCcGG-AGAcaaGCc -3'
miRNA:   3'- ucCGCGGCuCGGCGCUGuCCgUCU---CG- -5'
10810 3' -62.2 NC_002794.1 + 124141 0.66 0.696084
Target:  5'- cGGCGcCCGGGagcggucuCCGCGGggccCGGG-AGAGCg -3'
miRNA:   3'- uCCGC-GGCUC--------GGCGCU----GUCCgUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 122211 0.66 0.696084
Target:  5'- cGGUGCCGGcGCCGCuacGAUAaGCGGcGCc -3'
miRNA:   3'- uCCGCGGCU-CGGCG---CUGUcCGUCuCG- -5'
10810 3' -62.2 NC_002794.1 + 114199 0.66 0.696084
Target:  5'- cGGCGCCacGGCCgGCGuCuccGGCGGcAGCc -3'
miRNA:   3'- uCCGCGGc-UCGG-CGCuGu--CCGUC-UCG- -5'
10810 3' -62.2 NC_002794.1 + 59378 0.66 0.696084
Target:  5'- cGGCGCCGcGCCuGCuGCGGGCcuacGCc -3'
miRNA:   3'- uCCGCGGCuCGG-CGcUGUCCGucu-CG- -5'
10810 3' -62.2 NC_002794.1 + 78311 0.66 0.696084
Target:  5'- uGGCucucGCCcucucccGgCGCGACGGGCGGAGg -3'
miRNA:   3'- uCCG----CGGcu-----CgGCGCUGUCCGUCUCg -5'
10810 3' -62.2 NC_002794.1 + 96433 0.66 0.696084
Target:  5'- cGGCGCucgaucucaaCGAGCUGCaGAaAGGCuucuGGGCu -3'
miRNA:   3'- uCCGCG----------GCUCGGCG-CUgUCCGu---CUCG- -5'
10810 3' -62.2 NC_002794.1 + 81517 0.66 0.696084
Target:  5'- --cUGCCGAGCCuacuGCGACAcGCGcucGAGCg -3'
miRNA:   3'- uccGCGGCUCGG----CGCUGUcCGU---CUCG- -5'
10810 3' -62.2 NC_002794.1 + 135745 0.66 0.696084
Target:  5'- -cGCGCCGcGCCcuCGAggauCAGGCGGuGCu -3'
miRNA:   3'- ucCGCGGCuCGGc-GCU----GUCCGUCuCG- -5'
10810 3' -62.2 NC_002794.1 + 184954 0.66 0.696084
Target:  5'- -uGCGCCGgcccgcgcAGCCGCucguCGGGCAGcacgcAGCg -3'
miRNA:   3'- ucCGCGGC--------UCGGCGcu--GUCCGUC-----UCG- -5'
10810 3' -62.2 NC_002794.1 + 185474 0.66 0.696084
Target:  5'- cGGGCGgCG-GCCGCGGCgAGG-GGAccGCc -3'
miRNA:   3'- -UCCGCgGCuCGGCGCUG-UCCgUCU--CG- -5'
10810 3' -62.2 NC_002794.1 + 18852 0.66 0.693219
Target:  5'- gAGcGCGCCGucGCCGaucgccaacgccacCGACgccGGcGCGGAGCg -3'
miRNA:   3'- -UC-CGCGGCu-CGGC--------------GCUG---UC-CGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 80516 0.66 0.686519
Target:  5'- -uGCGCCGcGGCgCGCGACGccuGGCAccGGCg -3'
miRNA:   3'- ucCGCGGC-UCG-GCGCUGU---CCGUc-UCG- -5'
10810 3' -62.2 NC_002794.1 + 123743 0.66 0.686519
Target:  5'- cGGGCGuucCCGAGCCGUGccgcuuccCGGGCguGGAcGCc -3'
miRNA:   3'- -UCCGC---GGCUCGGCGCu-------GUCCG--UCU-CG- -5'
10810 3' -62.2 NC_002794.1 + 106417 0.66 0.686519
Target:  5'- cGGCGCCGGggcucauggcGCUGuUGGagaAGGCGGuGCa -3'
miRNA:   3'- uCCGCGGCU----------CGGC-GCUg--UCCGUCuCG- -5'
10810 3' -62.2 NC_002794.1 + 84927 0.66 0.686519
Target:  5'- cGGCGCgGAG-CGCuccccACAcGCGGAGCg -3'
miRNA:   3'- uCCGCGgCUCgGCGc----UGUcCGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 180674 0.66 0.686519
Target:  5'- gGGGaacuCGCCG-GCCGCucccggcgcccGGCGGGCGGAc- -3'
miRNA:   3'- -UCC----GCGGCuCGGCG-----------CUGUCCGUCUcg -5'
10810 3' -62.2 NC_002794.1 + 129057 0.66 0.686519
Target:  5'- uGGCGCgCGAcgguguGUCGCGGCuGGCGGcGGa -3'
miRNA:   3'- uCCGCG-GCU------CGGCGCUGuCCGUC-UCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.